RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ZNF142P52746 1687 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-208ENST00000583344 TNRQ92752 1358 aa4.12□□□□□ -1.75
SMCHD1-208ENST00000583344 UBR1Q8IWV7 1749 aa4.12□□□□□ -1.75
SMCHD1-208ENST00000583344 KDM3BQ7LBC6 1761 aa4.12□□□□□ -1.75
SMCHD1-208ENST00000583344 IGHV4OR15-8A0A075B7B6 117 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 hDV102S1A0JD36 115 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 HMX3A6NHT5 357 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 HNRNPCL2B2RXH8 293 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 GOLGA6L19H0YKK7 550 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 HBP1O60381 514 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 SLU7O95391 586 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 DDX58O95786 925 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 SKILP12757 684 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 H2AFXP16104 143 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 EIF2S2P20042 333 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 TNFAIP3P21580 790 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 MYF6P23409 242 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 CXCR3P49682 368 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 RBM5P52756 815 aaKnown RBP eCLIP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 CRIP2P52943 208 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 PRKAA2P54646 552 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 CCZ1BP86790 482 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 CCZ1P86791 482 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 BLMHQ13867 455 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 SMAD1Q15797 465 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 STX1AQ16623 288 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 MCMDC2Q4G0Z9 681 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 CCDC38Q502W7 563 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 DCAF6Q58WW2 860 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 ZNF484Q5JVG2 852 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 SH2D4BQ5SQS7 431 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 PMS2CLQ68D20 193 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 ADAM5Q6NVV9 412 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 FAM173BQ6P4H8 233 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 AACSQ86V21 672 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 DENND6AQ8IWF6 608 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 DHX40Q8IX18 779 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 CCAR2Q8N163 923 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 KRT222Q8N1A0 295 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 MAB21L3Q8N8X9 362 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 KBTBD3Q8NAB2 608 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 C1orf131Q8NDD1 294 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 NCSTNQ92542 709 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 KTI12Q96EK9 354 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 TIGD1Q96MW7 591 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 ZNF385AQ96PM9 386 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 YME1L1Q96TA2 773 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 NAT10Q9H0A0 1025 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 TAF1DQ9H5J8 278 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 LRRC4Q9HBW1 653 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 GPR108Q9NPR9 543 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 ZHX1Q9UKY1 873 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 RABGAP1Q9Y3P9 1069 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 NOTCH3Q9UM47 2321 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 NCAPD2Q15021 1401 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 MRC1P22897 1456 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 ARHGAP23Q9P227 1491 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 SLIT1O75093 1534 aa4.11□□□□□ -1.75
SMCHD1-208ENST00000583344 PIK3C2AO00443 1686 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 LMO7Q8WWI1 1683 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 MARF1Q9Y4F3 1742 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 A0A0D9SFI3 127 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 FAM237AA0A1B0GTK4 181 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 CTDNEP1O95476 244 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 YEATS4O95619 227 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 TPM1P09493 284 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 DHRS4L1P0CG22 281 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 CFC1BP0CG36 223 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 CFC1P0CG37 223 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 ARSFP54793 590 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 BRWD1-AS2P59051 145 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 SLC20A2Q08357 652 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 TEFQ10587 303 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 PPFIA1Q13136 1202 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 PDE1CQ14123 709 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 RABL6Q3YEC7 729 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 KLHL24Q6TFL4 600 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 GDPD4Q6W3E5 623 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 NEK10Q6ZWH5 1172 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 GHDCQ8N2G8 530 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 KCNH5Q8NCM2 988 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 NAXEQ8NCW5 288 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 GOLGA1Q92805 767 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 RNF183Q96D59 192 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 C16orf45Q96MC5 204 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 UBXN6Q9BZV1 441 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 NOX4Q9NPH5 578 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 G6PC2Q9NQR9 355 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 SLC9A2Q9UBY0 812 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 PA2G4Q9UQ80 394 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 SNX9Q9Y5X1 595 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 SALL1Q9NSC2 1324 aa4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 PHRF1Q9P1Y6 1649 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-208ENST00000583344 CCDC69A6NI79 296 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 USP27XA6NNY8 438 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 KRTAP9-6A8MVA2 160 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 H3BQV1 296 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 J3KRW8 73 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 SEPT4O43236 478 aa4.09□□□□□ -1.75
SMCHD1-208ENST00000583344 JAK2O60674 1132 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms