RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SPAG7O75391 227 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 KRT37O76014 449 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 KRT38O76015 456 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 TOP3BO95985 862 aaKnown RBP24.94■■□□□ 1.58
SHMT1-207ENST00000580002 MT-ND3P03897 115 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 ACADMP11310 421 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 GPATCH11Q8N954 259 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 LPGAT1Q92604 370 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 CLDN23Q96B33 292 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 C12orf65Q9H3J6 166 aaKnown RBP24.94■■□□□ 1.58
SHMT1-207ENST00000580002 NSMCE4AQ9NXX6 385 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 MBD1Q9UIS9 605 aaPredicted RBP24.94■■□□□ 1.58
SHMT1-207ENST00000580002 PRSS21Q9Y6M0 314 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 UBA6A0AVT1 1052 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-207ENST00000580002 HMGB1P1B2RPK0 211 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-207ENST00000580002 TPP1O14773 563 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 PYGBP11216 843 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 FMO4P31512 558 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 DGKEP52429 567 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 MTAPQ13126 283 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 ZNF460Q14592 562 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 CEP97Q8IW35 865 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 PLA2G15Q8NCC3 412 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 FAM136AQ96C01 138 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 AP2M1Q96CW1 435 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 OLFM1Q99784 485 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 C19orf43Q9BQ61 176 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 POLMQ9NP87 494 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-207ENST00000580002 FAM95CA0A1B0GW59 222 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 AGAP14A8MT82 685 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 PSMD11O00231 422 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 TSPAN6O43657 245 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 MTX2O75431 263 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 NDUFS3O75489 264 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 SOD1P00441 154 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 KRT4P19013 534 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 ITGALP20701 1170 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 TIAL1Q01085 375 aaKnown RBP eCLIP24.93■■□□□ 1.58
SHMT1-207ENST00000580002 MPP2Q14168 576 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 LMNTD2Q8IXW0 634 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 ELMO2Q96JJ3 720 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 GPR22Q99680 433 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 CRLS1Q9UJA2 301 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 SIT1Q9Y3P8 196 aa24.93■■□□□ 1.58
SHMT1-207ENST00000580002 ZNF106Q9H2Y7 1883 aaKnown RBP24.92■■□□□ 1.58
SHMT1-207ENST00000580002 MAT2AP31153 395 aaKnown RBP24.92■■□□□ 1.58
SHMT1-207ENST00000580002 PTPN5P54829 565 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 CDKN2DP55273 166 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 PPP2CBP62714 309 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 PPP2CAP67775 309 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 ZBTB16Q05516 673 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 TTC31Q49AM3 519 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-207ENST00000580002 KHDC1Q4VXA5 237 aaKnown RBP24.92■■□□□ 1.58
SHMT1-207ENST00000580002 NUS1Q96E22 293 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 BIRC8Q96P09 236 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 TPSD1Q9BZJ3 242 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 CHRDQ9H2X0 955 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 ITM2CQ9NQX7 267 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 GALPQ9UBC7 116 aa24.92■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3DA0A087WVF3 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3IA0A087WXS9 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3EA0A087X179 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3KA0A087X1G2 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 A0A1W2PQU0 124 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3FA6NER0 549 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3LB9A6J9 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 PHGDHO43175 533 aaKnown RBP24.91■■□□□ 1.58
SHMT1-207ENST00000580002 RNGTTO60942 597 aaKnown RBP24.91■■□□□ 1.58
SHMT1-207ENST00000580002 PAK4O96013 591 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3HP0C7X1 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 ACRV1P26436 265 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TAS2R39P59534 338 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 DCDC1P59894 354 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 B4GALNT1Q00973 533 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 CREB5Q02930 508 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 CTSL3PQ5NE16 218 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 LGSNQ5TDP6 509 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3GQ6DHY5 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3CQ6IPX1 549 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TBC1D3Q8IZP1 549 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-207ENST00000580002 NXPE1Q8N323 547 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 CLDN19Q8N6F1 224 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TSTD1Q8NFU3 115 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 RLN3Q8WXF3 142 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 TRPM6Q9BX84 2022 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 MBNL1Q9NR56 388 aaKnown RBP24.91■■□□□ 1.58
SHMT1-207ENST00000580002 SNX15Q9NRS6 342 aa24.91■■□□□ 1.58
SHMT1-207ENST00000580002 IQCF5A8MTL0 148 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 POLR3GO15318 223 aaPredicted RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 INPP4BO15327 924 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 DNAJC6O75061 913 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 CWF19L1Q69YN2 538 aaKnown RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 TIFABQ6ZNK6 161 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 USP30Q70CQ3 517 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 NRSN1Q8IZ57 195 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 MDM1Q8TC05 714 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 CNOT6Q9ULM6 557 aaKnown RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 SCML1Q9UN30 329 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 CYP8B1Q9UNU6 501 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 NCKAP1Q9Y2A7 1128 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms