RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MCF2P10911 925 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 FPR1P21462 350 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 SAT1P21673 171 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 SP100P23497 879 aaPredicted RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 NFKBIAP25963 317 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 CA8P35219 290 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 GGT5P36269 586 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 ARL1P40616 181 aaPredicted RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 OR1G1P47890 313 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 KCNJ5P48544 419 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 LIG4P49917 911 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 PTP4A2Q12974 167 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 GRIK3Q13003 919 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 EIF2B5Q13144 721 aaKnown RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 CBX3Q13185 183 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 DUSP8Q13202 625 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 MTM1Q13496 603 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 ALCAMQ13740 583 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 NTRK2Q16620 822 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 TCEAL5Q5H9L2 206 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 LRRC55Q6ZSA7 311 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 HAUS6Q7Z4H7 955 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 POLNQ7Z5Q5 900 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 XYLT1Q86Y38 959 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A1Q86YD7 464 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 DAW1Q8N136 415 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 VPS52Q8N1B4 723 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 SLC39A11Q8N1S5 342 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 HDDC3Q8N4P3 179 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 WDTC1Q8N5D0 677 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 DCBLD1Q8N8Z6 715 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 TMEM161BQ8NDZ6 487 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 OR52K2Q8NGK3 314 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 FIBINQ8TAL6 211 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 CPT1BQ92523 772 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 PABPC5Q96DU9 382 aaKnown RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 IGSF21Q96ID5 467 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 CNDP1Q96KN2 507 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 MRI1Q9BV20 369 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 KIFC3Q9BVG8 833 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 BRD8Q9H0E9 1235 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 NXF3Q9H4D5 531 aaKnown RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 PDZD7Q9H5P4 517 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 OPA3Q9H6K4 179 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 NRDE2Q9H7Z3 1164 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 VPS37BQ9H9H4 285 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 MRPL44Q9H9J2 332 aaKnown RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 ARHGEF3Q9NR81 526 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 SLC38A7Q9NVC3 462 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 PPP1R14DQ9NXH3 145 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 TAS2R3Q9NYW6 316 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 DNAJB9Q9UBS3 223 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 CORO1CQ9ULV4 474 aaPredicted RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 LIPT1Q9Y234 373 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 GDAQ9Y2T3 454 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 HES2Q9Y543 173 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS53-212ENST00000572259 EYSQ5T1H1 3165 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 RGSL1A5PLK6 1076 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CXorf49A8MYA2 514 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 PRR5-ARHGAP8B1AHC4 643 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 STX16-NPEPL1H3BU86 382 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 STX16O14662 325 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 MCF2LO15068 1137 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 POLR2DO15514 142 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 TRAPPC3O43617 180 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 FOXS1O43638 330 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 TADA2AO75478 443 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 RECQL4O94761 1208 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 AHSGP02765 367 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 PDHA1P08559 390 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CLTAP09496 248 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 LINC00271P0C7V0 271 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CMA1P23946 247 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 PBLDP30039 288 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 GARSP41250 739 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 ALDH1A3P47895 512 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CD151P48509 253 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 NDUFV1P49821 464 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 SCNN1GP51170 649 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 YBEYP58557 167 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 RAP2BP61225 183 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 ELAVL2Q12926 359 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 FOXL1Q12952 345 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 RPA4Q13156 261 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CRYMQ14894 314 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 HS1BP3Q53T59 392 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 HERC4Q5GLZ8 1057 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 C9orf152Q5JTZ5 239 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 KRBOX4Q5JUW0 171 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 MRNIPQ6NTE8 343 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CAVIN1Q6NZI2 390 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 WDR93Q6P2C0 686 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 TRAT1Q6PIZ9 186 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 ADCK1Q86TW2 530 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 CDR2LQ86X02 465 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 CCDC28AQ8IWP9 274 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 GSPT2Q8IYD1 628 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 ADGRF2Q8IZF7 708 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 SYCP3Q8IZU3 236 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms