RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LBHD1Q9BQE6 289 aaPredicted RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 C1QTNF5Q9BXJ0 243 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 USP44Q9H0E7 712 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 KCNN2Q9H2S1 579 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 TFB2MQ9H5Q4 396 aaKnown RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 ASAH2Q9NR71 780 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 TCP11L1Q9NUJ3 509 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 SAGE1Q9NXZ1 904 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 GGA3Q9NZ52 723 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 HAO1Q9UJM8 370 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 KLHL20Q9Y2M5 609 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 KCNK7Q9Y2U2 307 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 COL2A1P02458 1487 aaPredicted RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 SNED1Q8TER0 1413 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 ANKRD66B4E2M5 251 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 HHLA1C9JL84 531 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 FGF5P12034 268 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 ZNF182P17025 639 aaPredicted RBP2.75□□□□□ -1.97
VPS35-207ENST00000568191 XBP1P17861 261 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 ACVR2BQ13705 512 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 BAK1Q16611 211 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 DECR1Q16698 335 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 SLC9B1Q4ZJI4 515 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 C14orf177Q52M58 125 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 OR52I2Q8NH67 350 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 FSD1Q9BTV5 496 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 LRMDAQ9H2I8 198 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 ACSS1Q9NUB1 689 aaPredicted RBP2.75□□□□□ -1.97
VPS35-207ENST00000568191 INTS10Q9NVR2 710 aaKnown RBP2.75□□□□□ -1.97
VPS35-207ENST00000568191 ACSL5Q9ULC5 683 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 C2CD2Q9Y426 696 aa2.75□□□□□ -1.97
VPS35-207ENST00000568191 A0A1B0GU03 582 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 ZCWPW2A0A1B0GU75 182 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 C15orf62A8K5M9 175 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 VCYO14598 125 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 KCNN4O15554 427 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 PRKNO60260 465 aaPredicted RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 PDE9AO76083 593 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 IGLV1-44P01699 117 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 POLBP06746 335 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 CSF2RAP15509 400 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 UBA1P22314 1058 aaKnown RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 HOXA13P31271 388 aaPredicted RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 PPM1FP49593 454 aaPredicted RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 BIRC3Q13489 604 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 KRT71Q3SY84 523 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 STXBP5Q5T5C0 1151 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 HIST2H2BDQ6DRA6 164 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 MYPOPQ86VE0 399 aaPredicted RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 SPEM1Q8N4L4 309 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 PAF1Q8N7H5 531 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 SLC38A5Q8WUX1 472 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 APBB2Q92870 758 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 SMARCE1Q969G3 411 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 ZNF524Q96C55 264 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 HVCN1Q96D96 273 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 PABPC5Q96DU9 382 aaKnown RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 LITAFQ99732 161 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 ASCL2Q99929 193 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 GFRA4Q9GZZ7 299 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 BICC1Q9H694 974 aaKnown RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 BRF2Q9HAW0 419 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 SLC6A13Q9NSD5 602 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 MARCH4Q9P2E8 410 aaPredicted RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 UBA2Q9UBT2 640 aaPredicted RBP2.74□□□□□ -1.97
VPS35-207ENST00000568191 JRKLQ9Y4A0 524 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 PRSS21Q9Y6M0 314 aa2.74□□□□□ -1.97
VPS35-207ENST00000568191 NOTCH3Q9UM47 2321 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 H0YIN7 160 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 SH2B2O14492 632 aaPredicted RBP2.73□□□□□ -1.97
VPS35-207ENST00000568191 EIF3DO15371 548 aaKnown RBP eCLIP2.73□□□□□ -1.97
VPS35-207ENST00000568191 FTCDO95954 541 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 HNRNPA1P09651 372 aaKnown RBP eCLIP2.73□□□□□ -1.97
VPS35-207ENST00000568191 GGT5P36269 586 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 ARCN1P48444 511 aaKnown RBP2.73□□□□□ -1.97
VPS35-207ENST00000568191 NR2C2P49116 596 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 KCNJ10P78508 379 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 RPL24P83731 157 aaKnown RBP2.73□□□□□ -1.97
VPS35-207ENST00000568191 OLIG2Q13516 323 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 PDE1CQ14123 709 aaPredicted RBP2.73□□□□□ -1.97
VPS35-207ENST00000568191 FAM69AQ5T7M9 428 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 C18orf63Q68DL7 685 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 QSOX2Q6ZRP7 698 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 ZNF354CQ86Y25 554 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 LYG1Q8N1E2 194 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 BEST3Q8N1M1 668 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 SRBD1Q8N5C6 995 aaKnown RBP2.73□□□□□ -1.97
VPS35-207ENST00000568191 WDR20Q8TBZ3 569 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 GTF3C6Q969F1 213 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 PHF21AQ96BD5 680 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 ZBTB10Q96DT7 871 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 GRAMD2BQ96HH9 432 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 LRR1Q96L50 414 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 UBXN10Q96LJ8 280 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 ACOX2Q99424 681 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 UBXN6Q9BZV1 441 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 TKTL2Q9H0I9 626 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 PDCL3Q9H2J4 239 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 KIF9Q9HAQ2 790 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 ZBTB20Q9HC78 741 aaPredicted RBP2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms