RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TPM3P06753 285 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 TMEM253P0C7T8 217 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 GPLD1P80108 840 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 MESDQ14696 234 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 QPCTQ16769 361 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 LINC00303Q3SY05 128 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 CHST15Q7LFX5 561 aaPredicted RBP15.95■□□□□ 0.14
CLN3-229ENST00000567963 PLD5Q8N7P1 536 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 CNTD1Q8N815 330 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 SLC35G2Q8TBE7 412 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 CCHCR1Q8TD31 782 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 SLC37A2Q8TED4 501 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 TAAR9Q96RI9 348 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 DNAJC7Q99615 494 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 DPYSL5Q9BPU6 564 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 FAM83DQ9H4H8 585 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 PKD2L2Q9NZM6 624 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 PRKAB1Q9Y478 270 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 SSU72P8A0A1W2PR75 194 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 RGSL1A5PLK6 1076 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 FADS2P1A8MWK0 482 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 ZNF487B1APH4 448 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 EML2O95834 649 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 THRAP10827 490 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 MPSTP25325 297 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 CSF2RBP32927 897 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 ARSDP51689 593 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 IFI35P80217 286 aaPredicted RBP15.94■□□□□ 0.14
CLN3-229ENST00000567963 ZBTB17Q13105 803 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 TMEM71Q6P5X7 295 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 VASH2Q86V25 355 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 AGBL5Q8NDL9 886 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 EID2BQ96D98 161 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 ZNF830Q96NB3 372 aaPredicted RBP15.94■□□□□ 0.14
CLN3-229ENST00000567963 SLC38A3Q99624 504 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 ADGRE3Q9BY15 652 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 DEF6Q9H4E7 631 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 TMEM9Q9P0T7 183 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 HEY1Q9Y5J3 304 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 BSNQ9UPA5 3926 aa15.94■□□□□ 0.14
CLN3-229ENST00000567963 SDK2Q58EX2 2172 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 LRRD1A4D1F6 860 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 C3orf70A6NLC5 250 aaPredicted RBP15.93■□□□□ 0.14
CLN3-229ENST00000567963 STMND1H3BQB6 276 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 ITGB2P05107 769 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 CSTF2P33240 577 aaKnown RBP eCLIP15.93■□□□□ 0.14
CLN3-229ENST00000567963 ARHGAP25P42331 645 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.93■□□□□ 0.14
CLN3-229ENST00000567963 SLC9A4Q6AI14 798 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 IYDQ6PHW0 289 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 VSIG1Q86XK7 387 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 ZNF761Q86XN6 746 aaPredicted RBP15.93■□□□□ 0.14
CLN3-229ENST00000567963 EXD3Q8N9H8 876 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 ZSCAN1Q8NBB4 408 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 AHCYL2Q96HN2 611 aaKnown RBP15.93■□□□□ 0.14
CLN3-229ENST00000567963 RMI1Q9H9A7 625 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 PDP2Q9P2J9 529 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 TBC1D29Q9UFV1 150 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 PCDHGA4Q9Y5G9 962 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 PCDHGA3Q9Y5H0 932 aa15.93■□□□□ 0.14
CLN3-229ENST00000567963 J3QKU1 62 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 AKR1B10O60218 316 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 HHEXQ03014 270 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 AP1B1Q10567 949 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 TRIM14Q14142 442 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 FAM182AQ5T1J6 154 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 XKR5Q6UX68 686 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 OR10G6Q8NH81 332 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 EXTL1Q92935 676 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 PMEPA1Q969W9 287 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 TRIB3Q96RU7 358 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 MAK16Q9BXY0 300 aaKnown RBP15.92■□□□□ 0.14
CLN3-229ENST00000567963 ZFYVE1Q9HBF4 777 aa15.92■□□□□ 0.14
CLN3-229ENST00000567963 SARS2Q9NP81 518 aaKnown RBP15.92■□□□□ 0.14
CLN3-229ENST00000567963 ZNHIT6Q9NWK9 470 aaKnown RBP15.92■□□□□ 0.14
CLN3-229ENST00000567963 TENM4Q6N022 2769 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 NUAK1O60285 661 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 WT1P19544 449 aaPredicted RBP15.91■□□□□ 0.14
CLN3-229ENST00000567963 GALNT3Q14435 633 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 WDR74Q6RFH5 385 aaPredicted RBP15.91■□□□□ 0.14
CLN3-229ENST00000567963 LYSMD3Q7Z3D4 306 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 KDELC2Q7Z4H8 507 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 NT5DC3Q86UY8 548 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 CCDC112Q8NEF3 446 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.91■□□□□ 0.14
CLN3-229ENST00000567963 JPH3Q8WXH2 748 aaPredicted RBP15.91■□□□□ 0.14
CLN3-229ENST00000567963 ART4Q93070 314 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 NKD1Q969G9 470 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 IMP4Q96G21 291 aaKnown RBP15.91■□□□□ 0.14
CLN3-229ENST00000567963 CHP1Q99653 195 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 DDA1Q9BW61 102 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 CEP41Q9BYV8 373 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 CARD9Q9H257 536 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 OCIAD1Q9NX40 245 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 KCNK6Q9Y257 313 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 B3GALT1Q9Y5Z6 326 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 A6NCN8 305 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 APOL1O14791 398 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 GRID2O43424 1007 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 DUX1O43812 170 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms