RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TRAPPC9Q96Q05 1148 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 TESK2Q96S53 571 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 PKP4Q99569 1192 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 DHRS9Q9BPW9 319 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 TMEM120AQ9BXJ8 343 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 TRIM15Q9C019 465 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 DCLK3Q9C098 648 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 KLK15Q9H2R5 256 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 RHBGQ9H310 441 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 SMOC2Q9H3U7 446 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 FAM204AQ9H8W3 233 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 TRIM45Q9H8W5 580 aaPredicted RBP5.13□□□□□ -1.59
VPS35-205ENST00000563984 INIPQ9NRY2 104 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 MRPS18AQ9NVS2 196 aaKnown RBP5.13□□□□□ -1.59
VPS35-205ENST00000563984 RHBDL2Q9NX52 303 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 ARHGEF38Q9NXL2 777 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 NINJ2Q9NZG7 142 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 KLHL9Q9P2J3 617 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 DBF4Q9UBU7 674 aaPredicted RBP5.13□□□□□ -1.59
VPS35-205ENST00000563984 TSPYL4Q9UJ04 414 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 GGA2Q9UJY4 613 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.13□□□□□ -1.59
VPS35-205ENST00000563984 USP16Q9Y5T5 823 aa5.13□□□□□ -1.59
VPS35-205ENST00000563984 A0A1W2PPW3 197 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 TYW5A2RUC4 315 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 TMEM210A6NLX4 147 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 A6NNZ2 444 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 M0QYG6 137 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 TAF4O00268 1085 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 BTN3A1O00481 513 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 KCNN4O15554 427 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CBR3O75828 277 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 DNAJB5O75953 348 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 C1QL1O75973 258 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 MYO1DO94832 1006 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 GCNT3O95395 438 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 OTCP00480 354 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 AFPP02771 609 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 HSMCR30P0CW71 290 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 MYBL1P10243 752 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CPA3P15088 417 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 IFNAR1P17181 557 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CD6P30203 668 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 HLA-FP30511 346 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 SLC26A3P40879 764 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 IL15P40933 162 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 ARCN1P48444 511 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 PCYT1AP49585 367 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 NT5C2P49902 561 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 MFAP3P55082 362 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 STX17P56962 302 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 MORF4L2Q15014 288 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 RRS1Q15050 365 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 PARP6Q2NL67 630 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 SMU1Q2TAY7 513 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 COLEC12Q5KU26 742 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CES4AQ5XG92 561 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 SFRP4Q6FHJ7 346 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 ZNF425Q6IV72 752 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 DEGS2Q6QHC5 323 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 ANO5Q75V66 913 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 LRRTM4Q86VH4 590 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 ERICH1Q86X53 443 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 DIS3L2Q8IYB7 885 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 FAM109AQ8N4B1 249 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 TBC1D19Q8N5T2 526 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CELF5Q8N6W0 485 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 SPATA20Q8TB22 786 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CCDC12Q8WUD4 166 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 RFFLQ8WZ73 363 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 TRIM43Q96BQ3 446 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 FAM136AQ96C01 138 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 SPACA9Q96E40 222 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 RRP36Q96EU6 259 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 EDC3Q96F86 508 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 HES6Q96HZ4 224 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 FAM71F1Q96KD3 344 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 BBS4Q96RK4 519 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 USP28Q96RU2 1077 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 PLIN2Q99541 437 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 RAD9AQ99638 391 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CGRRF1Q99675 332 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CCM2Q9BSQ5 444 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CCDC28BQ9BUN5 200 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 STRA6Q9BX79 667 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CALN1Q9BXU9 219 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 FRMD8P1Q9BZ68 369 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 MRPL37Q9BZE1 423 aaKnown RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 UBXN6Q9BZV1 441 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 TMEM245Q9H330 911 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 SNX25Q9H3E2 840 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 ERVMER34-1Q9H9K5 563 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 CERS4Q9HA82 394 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 VPS54Q9P1Q0 977 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 PCDHGB4Q9UN71 923 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 NAALADL1Q9UQQ1 740 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 RPH3AQ9Y2J0 694 aaPredicted RBP5.12□□□□□ -1.59
VPS35-205ENST00000563984 PCDHGB6Q9Y5F9 930 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 ADGRA2Q96PE1 1338 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 PASKQ96RG2 1323 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms