RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ALFQ53S48 1182 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 BRMS1LQ5PSV4 323 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 PIK3R6Q5UE93 754 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 KANK2Q63ZY3 851 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 PRMT9Q6P2P2 845 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 SPRED1Q7Z699 444 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 SCD5Q86SK9 330 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 DCP1BQ8IZD4 617 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 TTC16Q8NEE8 873 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 FBXL8Q96CD0 374 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 RNF145Q96MT1 663 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 PLEKHG4BQ96PX9 1271 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 ACOX2Q99424 681 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 MTG1Q9BT17 334 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 SEZ6LQ9BYH1 1024 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 IKZF3Q9UKT9 509 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 LDB2O43679 373 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 PCNAP12004 261 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 UGT1A1P22309 533 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 UGT1A4P22310 534 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TPP2P29144 1249 aaPredicted RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 HMOX2P30519 316 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 UGT1A3P35503 534 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 UGT1A5P35504 534 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 RENBPP51606 427 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 GALNT3Q14435 633 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 RALGPS2Q86X27 583 aaPredicted RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 CIR1Q86X95 450 aaPredicted RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 SCN4BQ8IWT1 228 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 KIAA2013Q8IYS2 634 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 LRRC43Q8N309 656 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TBC1D15Q8TC07 691 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ADAMTS16Q8TE57 1224 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 SLC30A3Q99726 388 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ZNF408Q9H9D4 720 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 SP110Q9HB58 689 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ATP13A1Q9HD20 1204 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ABCC13Q9NSE7 274 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 OSER1Q9NX31 292 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 EVLQ9UI08 416 aaPredicted RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 CPA4Q9UI42 421 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ST3GAL5Q9UNP4 418 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 A0A1W2PQH9 124 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 CCDC162PA2VCL2 907 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 MROH6A6NGR9 719 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 GLP2RO95838 553 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 FDXRP22570 491 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 AGTR2P50052 363 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 KCNK10P57789 538 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 CLCQ05315 142 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TRAF2Q12933 501 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 NAT16Q8N8M0 369 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLN3-210ENST00000563874 SLC52A3Q9NQ40 469 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 HACD3Q9P035 362 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 SUN2Q9UH99 717 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ZNHIT2Q9UHR6 403 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ANAPC2Q9UJX6 822 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TCRBV5S2A0A599 114 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ENPP3O14638 875 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 CD3EAPO15446 510 aaKnown RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 FGF4P08620 206 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 MATN1P21941 496 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 NFKB2Q00653 900 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 UPP1Q16831 310 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 IRAK1BP1Q5VVH5 260 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 AFMIDQ63HM1 303 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ZNF467Q7Z7K2 595 aaPredicted RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 RBM12BQ8IXT5 1001 aaKnown RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 PGBD5Q8N414 524 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 SGCDQ92629 289 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TANKQ92844 425 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 SLC10A4Q96EP9 437 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 MUS81Q96NY9 551 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 HBEGFQ99075 208 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 SMOC2Q9H3U7 446 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 ZFYVE28Q9HCC9 887 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 TBC1D23Q9NUY8 699 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 IFT80Q9P2H3 777 aaPredicted RBP13.14□□□□□ -0.31
CLN3-210ENST00000563874 GPR45Q9Y5Y3 372 aa13.14□□□□□ -0.31
CLN3-210ENST00000563874 A0A1W2PP18 115 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 ZBTB11O95625 1053 aaPredicted RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 LDLRP01130 860 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 CYBBP04839 570 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 ITGB1P05556 798 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 GPIP06744 558 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 IDO1P14902 403 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 MLLT6P55198 1093 aaPredicted RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 ATP1A4Q13733 1029 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 TSNQ15631 228 aaKnown RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 UGT3A1Q6NUS8 523 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 FAM171BQ6P995 826 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 PAQR3Q6TCH7 311 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 ZC3H7AQ8IWR0 971 aaKnown RBP13.13□□□□□ -0.31
CLN3-210ENST00000563874 PPP1R2P1Q96PQ5 205 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 ATOH8Q96SQ7 321 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 CHID1Q9BWS9 393 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 LTB4R2Q9NPC1 389 aa13.13□□□□□ -0.31
CLN3-210ENST00000563874 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLN3-210ENST00000563874 CDH7Q9ULB5 785 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms