RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 SLC9B2Q86UD5 537 aa12.88□□□□□ -0.35
SF3B3-202ENST00000562722 NLGN4XQ8N0W4 816 aa12.88□□□□□ -0.35
SF3B3-202ENST00000562722 TEX26Q8N6G2 289 aa12.88□□□□□ -0.35
SF3B3-202ENST00000562722 NIPA2Q8N8Q9 360 aa12.88□□□□□ -0.35
SF3B3-202ENST00000562722 NLGN4YQ8NFZ3 816 aaPredicted RBP12.88□□□□□ -0.35
SF3B3-202ENST00000562722 ZNF564Q8TBZ8 553 aaPredicted RBP12.88□□□□□ -0.35
SF3B3-202ENST00000562722 SH3KBP1Q96B97 665 aa12.88□□□□□ -0.35
SF3B3-202ENST00000562722 COX14Q96I36 57 aa12.88□□□□□ -0.35
SF3B3-202ENST00000562722 TDRD1Q9BXT4 1180 aaKnown RBP12.88□□□□□ -0.35
SF3B3-202ENST00000562722 RCOR3Q9P2K3 495 aaPredicted RBP12.88□□□□□ -0.35
SF3B3-202ENST00000562722 SDK2Q58EX2 2172 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 CYSRT1A8MQ03 144 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 MYO1FO00160 1098 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 MATN3O15232 486 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 CAPN5O15484 640 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 SLC2A4P14672 509 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 GALNT2Q10471 571 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 IFI16Q16666 785 aaKnown RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 ZFYVE27Q5T4F4 411 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 WDR74Q6RFH5 385 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 CEACAM20Q6UY09 585 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 NLRP8Q86W28 1048 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 PHYKPLQ8IUZ5 450 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 UNC5BQ8IZJ1 945 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 KCTD6Q8NC69 237 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 CCHCR1Q8TD31 782 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 RTP4Q96DX8 246 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 NAP1L5Q96NT1 182 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 CATSPER2Q96P56 530 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 BPIFA3Q9BQP9 254 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 EFHD1Q9BUP0 239 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 FAM83DQ9H4H8 585 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 PCDH9Q9HC56 1237 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 SARS2Q9NP81 518 aaKnown RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 PKD2L2Q9NZM6 624 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 VPS18Q9P253 973 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 TBC1D29Q9UFV1 150 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 PILRAQ9UKJ1 303 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 BZW2Q9Y6E2 419 aaKnown RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 OAS3Q9Y6K5 1087 aaKnown RBP12.87□□□□□ -0.35
SF3B3-202ENST00000562722 BSNQ9UPA5 3926 aa12.87□□□□□ -0.35
SF3B3-202ENST00000562722 A0A1B0GTH6 734 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 NKX2-8O15522 239 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 DNAJC6O75061 913 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 MAP4P27816 1152 aaKnown RBP12.86□□□□□ -0.35
SF3B3-202ENST00000562722 RPL26P61254 145 aaKnown RBP12.86□□□□□ -0.35
SF3B3-202ENST00000562722 MC2RQ01718 297 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 DPYSL3Q14195 570 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 SKIDA1Q1XH10 827 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 ANKRD20A8PQ5CZ79 823 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 NCBP2-AS2Q69YL0 99 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 LYSMD3Q7Z3D4 306 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 BMPERQ8N8U9 685 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 CCNYQ8ND76 341 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 LRRN4Q8WUT4 740 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 MAML1Q92585 1016 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 SLC45A3Q96JT2 553 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 ZPBPQ9BS86 351 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 HERPUD2Q9BSE4 406 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-202ENST00000562722 OSGEPL1Q9H4B0 414 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 ZNF71Q9NQZ8 489 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-202ENST00000562722 RPL26L1Q9UNX3 145 aaKnown RBP12.86□□□□□ -0.35
SF3B3-202ENST00000562722 PCYT1BQ9Y5K3 369 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-202ENST00000562722 SPTA1P02549 2419 aa12.86□□□□□ -0.35
SF3B3-202ENST00000562722 LOC101059948A0A1B0GTJ6 334 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 POLR1CO15160 346 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-202ENST00000562722 GRID2O43424 1007 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 STK17BO94768 372 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 SLC4A1P02730 911 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 HLA-DQB2P05538 268 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 MX2P20592 715 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 IL4RP24394 825 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 CCNCP24863 283 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 CD86P42081 329 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 SPINT3P49223 89 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 EPHA4P54764 986 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 NIPAL4Q0D2K0 466 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 PAFAH1B3Q15102 231 aaKnown RBP12.85□□□□□ -0.35
SF3B3-202ENST00000562722 DEFB109BQ30KR1 87 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ZNF569Q5MCW4 686 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ALS2CLQ60I27 953 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ALG1LQ6GMV1 187 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 C16orf46Q6P387 395 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 IYDQ6PHW0 289 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ARHGAP22Q7Z5H3 698 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 TRIM48Q8IWZ4 208 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 AVL9Q8NBF6 648 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 C9orf43Q8TAL5 461 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ZNF830Q96NB3 372 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ZNF670Q9BS34 389 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 MLPHQ9BV36 600 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-202ENST00000562722 SPATA16Q9BXB7 569 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 TBC1D10AQ9BXI6 508 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 ADGRE3Q9BY15 652 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 RMI1Q9H9A7 625 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 APMAPQ9HDC9 416 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 PDP2Q9P2J9 529 aa12.85□□□□□ -0.35
SF3B3-202ENST00000562722 CPNE7Q9UBL6 633 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms