RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 TMEM98Q9Y2Y6 226 aa9.73□□□□□ -0.85
CLK3-208ENST00000562626 TCAF1Q9Y4C2 921 aa9.73□□□□□ -0.85
CLK3-208ENST00000562626 ST14Q9Y5Y6 855 aa9.73□□□□□ -0.85
CLK3-208ENST00000562626 SPTY2D1-AS1A0A0U1RR47 76 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 CCDC162PA2VCL2 907 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 EFCAB8A8MWE9 144 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 STX7O15400 261 aaKnown RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 SDC3O75056 442 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 MTX2O75431 263 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 CEACAM5P06731 702 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 MYCLP1P12525 358 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 ARNTP27540 789 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 SPAM1P38567 509 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 DPP6P42658 865 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 TNNT3P45378 269 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 RABIFP47224 123 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 C21orf59P57076 290 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 KIAA1024LP59773 190 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 SEMA3AQ14563 771 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 TEAD4Q15561 434 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 HP1BP3Q5SSJ5 553 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 TSTD2Q5T7W7 516 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 PSAPL1Q6NUJ1 521 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 DOK6Q6PKX4 331 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 ADAMTSL4Q6UY14 1074 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 MACC1Q6ZN28 852 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 SYDE1Q6ZW31 735 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 IQCHQ86VS3 1027 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 NLRP8Q86W28 1048 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 GATAD2AQ86YP4 633 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 SFTPA2Q8IWL1 248 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 PPIL6Q8IXY8 311 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 MMGT1Q8N4V1 131 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 TRAM1L1Q8N609 369 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 MCUQ8NE86 351 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 TSACCQ96A04 125 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 LRRC45Q96CN5 670 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 MFSD3Q96ES6 412 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 SNF8Q96H20 258 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 TBATAQ96M53 351 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 RUNDC3BQ96NL0 473 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 FCRL3Q96P31 734 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 PLEKHG4BQ96PX9 1271 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 ERP44Q9BS26 406 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 SPATA16Q9BXB7 569 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 C1QTNF7Q9BXJ2 289 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 NUSAP1Q9BXS6 441 aaKnown RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 FRMD8Q9BZ67 464 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 GAREM1Q9H706 876 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 WDR26Q9H7D7 661 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 L2HGDHQ9H9P8 463 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 TREX1Q9NSU2 369 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 NLE1Q9NVX2 485 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 UCKL1Q9NWZ5 548 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 IL1RAPL1Q9NZN1 696 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 FEZ2Q9UHY8 353 aaPredicted RBP9.72□□□□□ -0.85
CLK3-208ENST00000562626 PLEKHM1Q9Y4G2 1056 aa9.72□□□□□ -0.85
CLK3-208ENST00000562626 KIF26BQ2KJY2 2108 aa9.71□□□□□ -0.85
CLK3-208ENST00000562626 GLYATL1P3A0A0U1RQE8 302 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 A0A1B0GTQ1 180 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 RGSL1A5PLK6 1076 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 FAM187AA6NFU0 413 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 C4orf47A7E2U8 309 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 PRAMEF1O95521 474 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 CRTAMO95727 393 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 GIMD1P0DJR0 217 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 ADRA1DP25100 572 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 TEAD1P28347 426 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 MC4RP32245 332 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 FOXN2P32314 431 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 THOP1P52888 689 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 YPEL5P62699 121 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 CDK16Q00536 496 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 ACVR1Q04771 509 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 DHX9Q08211 1270 aaKnown RBP9.71□□□□□ -0.86
CLK3-208ENST00000562626 FASTKD3Q14CZ7 662 aaKnown RBP9.71□□□□□ -0.86
CLK3-208ENST00000562626 ST3GAL2Q16842 350 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 AASDHQ4L235 1098 aaPredicted RBP9.71□□□□□ -0.86
CLK3-208ENST00000562626 C8orf74Q6P047 294 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 ENPP7Q6UWV6 458 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 DGLUCYQ7Z3D6 616 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 SPNS2Q8IVW8 549 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 RAVER1Q8IY67 606 aaKnown RBP9.71□□□□□ -0.86
CLK3-208ENST00000562626 PIANPQ8IYJ0 282 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 UNC5BQ8IZJ1 945 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 CCL4L1Q8NHW4 92 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 CDKN2AIPNLQ96HQ2 116 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 HIC2Q96JB3 615 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 WDR92Q96MX6 357 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 SRPK1Q96SB4 655 aaKnown RBP9.71□□□□□ -0.86
CLK3-208ENST00000562626 CLPBQ9H078 707 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 GDF3Q9NR23 364 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 TM7SF3Q9NS93 570 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 IGSF5Q9NSI5 407 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 DNAJC28Q9NX36 388 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 MARCH4Q9P2E8 410 aaPredicted RBP9.71□□□□□ -0.86
CLK3-208ENST00000562626 SOX13Q9UN79 622 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 BTBD3Q9Y2F9 522 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 PRKAB1Q9Y478 270 aa9.71□□□□□ -0.86
CLK3-208ENST00000562626 UNC13CQ8NB66 2214 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms