RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PSMA3P25788 255 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 BNIP3Q12983 259 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 PTK6Q13882 451 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 LRP8Q14114 963 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 DHX34Q14147 1143 aaKnown RBP12.9□□□□□ -0.34
NEDD8-208ENST00000560427 POU6F1Q14863 301 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 PPP1R7Q15435 360 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 ZNF542PQ5EBM4 170 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 PRRT3Q5FWE3 981 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 DGLUCYQ7Z3D6 616 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 GKN2Q86XP6 184 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 RBFAQ8N0V3 343 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 SLC25A45Q8N413 288 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 FAM181AQ8N9Y4 354 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 DEFB124Q8NES8 71 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 OR4K2Q8NGD2 314 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 STYXQ8WUJ0 223 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 SCG3Q8WXD2 468 aaKnown RBP12.9□□□□□ -0.34
NEDD8-208ENST00000560427 TSACCQ96A04 125 aaPredicted RBP12.9□□□□□ -0.34
NEDD8-208ENST00000560427 ZCCHC2Q9C0B9 1178 aaKnown RBP12.9□□□□□ -0.34
NEDD8-208ENST00000560427 IL22Q9GZX6 179 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 FTSJ1Q9UET6 329 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 PNMA8BQ9ULN7 279 aaPredicted RBP12.9□□□□□ -0.34
NEDD8-208ENST00000560427 KNL1Q8NG31 2342 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 MROH6A6NGR9 719 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 TNFSF14O43557 240 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 VEGFDO43915 354 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 SLC25A14O95258 325 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ANXA6P08133 673 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 MLNP12872 115 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ADRA1DP25100 572 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 NPY2RP49146 381 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 VPS41P49754 854 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 CKAP4Q07065 602 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ILF3Q12906 894 aaKnown RBP eCLIP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 KCNJ11Q14654 390 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 TRIP13Q15645 432 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 SKIDA1Q1XH10 827 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 LDLRAP1Q5SW96 308 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ZCCHC8Q6NZY4 707 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 LRRC8BQ6P9F7 803 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 FAM151BQ6UXP7 276 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 PCGF5Q86SE9 256 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 GALNT13Q8IUC8 556 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 DDHD1Q8NEL9 900 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 PPHLN1Q8NEY8 458 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 LMX1AQ8TE12 382 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 PTCD2Q8WV60 388 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 HEXDCQ8WVB3 486 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ULK4Q96C45 1275 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 OR2M4Q96R27 311 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 GSDMCQ9BYG8 508 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 CARS2Q9HA77 564 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 TRIM39Q9HCM9 518 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 CYP4F12Q9HCS2 524 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 XAB2Q9HCS7 855 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 NLE1Q9NVX2 485 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 UCKL1Q9NWZ5 548 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 BFARQ9NZS9 450 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 SUFUQ9UMX1 484 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 BTBD3Q9Y2F9 522 aa12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ASCC3Q8N3C0 2202 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 ZNF106Q9H2Y7 1883 aaKnown RBP12.89□□□□□ -0.35
NEDD8-208ENST00000560427 LRP4O75096 1905 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 DCDC2BA2VCK2 349 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 AGAP14A8MT82 685 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 SMAPO00193 183 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 GAPDHSO14556 408 aaPredicted RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 NDC80O14777 642 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 NUAK1O60285 661 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 DNAJC6O75061 913 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 SRP72O76094 671 aaKnown RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ASMTLO95671 621 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 GIMD1P0DJR0 217 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 TPH1P17752 444 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ITGALP20701 1170 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 XIAPP98170 497 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 DR1Q01658 176 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 NFATC2Q13469 925 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 TUBB2AQ13885 445 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 SEPT6Q14141 434 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 TRIP6Q15654 476 aaKnown RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 CHRNA6Q15825 494 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 PROX2Q3B8N5 592 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 GPR33Q49SQ1 333 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ATP13A5Q4VNC0 1218 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 PCID2Q5JVF3 399 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 C6orf132Q5T0Z8 1188 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 PSAPL1Q6NUJ1 521 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 DOK6Q6PKX4 331 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ERMP1Q7Z2K6 904 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ZNF572Q7Z3I7 529 aaPredicted RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 PPIL6Q8IXY8 311 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 EID2Q8N6I1 236 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 MCUQ8NE86 351 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 OR13C4Q8NGS5 318 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ZNF398Q8TD17 642 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 CPT1BQ92523 772 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 GLMNQ92990 594 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 TUBB2BQ9BVA1 445 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms