RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 POU4F1Q01851 419 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 UNC50Q53HI1 259 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 CIR1Q86X95 450 aaPredicted RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 CSF3RQ99062 836 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 MEAF6Q9HAF1 191 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 POLG2Q9UHN1 485 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 UBQLN1Q9UMX0 589 aaKnown RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 ERGIC3Q9Y282 383 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 NRXN2Q9P2S2 1712 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 IGKV6-21A0A0C4DH24 114 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 DYNC1LI2O43237 492 aaPredicted RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 GUCA1CO95843 209 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 CTSHP09668 335 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 ZNF37AP17032 561 aaPredicted RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 GPX3P22352 226 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 AFF1P51825 1210 aaKnown RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 USP41Q3LFD5 358 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 LBX2Q6XYB7 198 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 PLD3Q8IV08 490 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 FAM86B1Q8N7N1 296 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 NDNFQ8TB73 568 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 MTFMTQ96DP5 389 aaKnown RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 ZNF419Q96HQ0 510 aaPredicted RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 KIFC1Q9BW19 673 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 ROGDIQ9GZN7 287 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 ZNF408Q9H9D4 720 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.28□□□□□ -0.6
LDLR-208ENST00000558518 ARL5AQ9Y689 179 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 BRCA2P51587 3418 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 TARM1B6A8C7 271 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 BTN3A1O00481 513 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 BCAS1O75363 584 aaPredicted RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 RASAL1O95294 804 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 RFC2P35250 354 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 VAC14Q08AM6 782 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 TSNQ15631 228 aaKnown RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 SYT16Q17RD7 645 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 NIPAL1Q6NVV3 410 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 SLC27A1Q6PCB7 646 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 TMEM207Q6UWW9 146 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 PLPPR4Q7Z2D5 763 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 MIB1Q86YT6 1006 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 CCDC103Q8IW40 242 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 LGI2Q8N0V4 545 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 CADM3Q8N126 398 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 FBXO39Q8N4B4 442 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 OR13C4Q8NGS5 318 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 GPR152Q8TDT2 470 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 FRS2Q8WU20 508 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 PCED1BQ96HM7 432 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 C12orf42Q96LP6 360 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 SMIM14Q96QK8 99 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 TMEM30AQ9NV96 361 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 GIN1Q9NXP7 522 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 CD274Q9NZQ7 290 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 KLQ9UEF7 1012 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 SEPT3Q9UH03 358 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 A8MV72 311 aaPredicted RBP11.27□□□□□ -0.6
LDLR-208ENST00000558518 TBX1O43435 398 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 C1RP00736 705 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 LILRA4P59901 499 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 NCS1P62166 190 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ADAM17P78536 824 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 DAB2P98082 770 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 PPIL2Q13356 520 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 BTG3Q14201 252 aaPredicted RBP11.27□□□□□ -0.6
LDLR-208ENST00000558518 SELPLGQ14242 412 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ATP6AP1Q15904 470 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 UGT3A2Q3SY77 523 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ZNF678Q5SXM1 525 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ZNF362Q5T0B9 420 aaPredicted RBP11.27□□□□□ -0.6
LDLR-208ENST00000558518 KCTD11Q693B1 232 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 LARP4Q71RC2 724 aaKnown RBP eCLIP11.27□□□□□ -0.63e-8■■□□□ 12.3
LDLR-208ENST00000558518 EFHBQ8N7U6 833 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 POC5Q8NA72 575 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 MYRFLQ96LU7 910 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ZNF560Q96MR9 790 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 SP110Q9HB58 689 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 HMG20AQ9NP66 347 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ACTR3BQ9P1U1 418 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 GALPQ9UBC7 116 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 FBXW11Q9UKB1 542 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 PCDHGA8Q9Y5G5 932 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 SLC30A1Q9Y6M5 507 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 ANKRD31Q8N7Z5 1873 aa11.27□□□□□ -0.6
LDLR-208ENST00000558518 LOC100506127A0A0U1RQW1 187 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 MOXD2PA6NHM9 499 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 G3V2T6 193 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 SLC22A2O15244 555 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 MTSS1O43312 755 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 DEAF1O75398 565 aaPredicted RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 MFN2O95140 757 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 CHEK2O96017 543 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 FYNP06241 537 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 DBTP11182 482 aaKnown RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 TRPC1P48995 793 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 GEMP55040 296 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 CYP4F2P78329 520 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 CYP4F3Q08477 520 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 AQP6Q13520 282 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms