RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IGSF5Q9NSI5 407 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 DZANK1Q9NVP4 752 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 POLR3BQ9NW08 1133 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 PCDHB1Q9Y5F3 818 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 HELZP42694 1942 aaKnown RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 MTCL1Q9Y4B5 1905 aaKnown RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 A0A0J9YYE9 177 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 CAPN8A6NHC0 703 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 SCAMP3O14828 347 aaKnown RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 VPS26AO75436 327 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 POP4O95707 220 aaKnown RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 TRBC1P01850 177 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ASLP04424 464 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 SERPINA6P08185 405 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ANPEPP15144 967 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 SERPINB3P29508 390 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 HLA-FP30511 346 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 MC4RP32245 332 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 RECQLP46063 649 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ATP6V0D1P61421 351 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 POLR2LP62875 67 aaKnown RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 PFKPQ01813 784 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 GALNT1Q10472 559 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 MED21Q13503 144 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 CAMK1Q14012 370 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 CSHL1Q14406 222 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ATXN7L2Q5T6C5 722 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 METTL21CQ5VZV1 264 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 BORAQ6PGQ7 559 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 USP45Q70EL2 814 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 RNF135Q8IUD6 432 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 SCUBE1Q8IWY4 988 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 TMEM151AQ8N4L1 468 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 NKAPQ8N5F7 415 aaKnown RBP12.59□□□□□ -0.39
SHMT2-229ENST00000557348 HEXDCQ8WVB3 486 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 PIH1D2Q8WWB5 315 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 LPGAT1Q92604 370 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 RILPQ96NA2 401 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ASB2Q96Q27 587 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 OLFM1Q99784 485 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 TM6SF2Q9BZW4 377 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 CDH19Q9H159 772 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 Q9H521 79 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 SFXN1Q9H9B4 322 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ZFYVE1Q9HBF4 777 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 IL17CQ9P0M4 197 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 CCL26Q9Y258 94 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 HCFC2Q9Y5Z7 792 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 ALPK3Q96L96 1907 aa12.59□□□□□ -0.39
SHMT2-229ENST00000557348 MYLKQ15746 1914 aa12.58□□□□□ -0.39
SHMT2-229ENST00000557348 OR51F1A6NGY5 319 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 NEDD8-MDP1E9PL57 170 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 H3BMM5 538 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 AURKAO14965 403 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 KRT36O76013 467 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 SRP72O76094 671 aaKnown RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 ADH1CP00326 375 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 MT-CO1P00395 513 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 ESR1P03372 595 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 CA3P07451 260 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 TYRP14679 529 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 IRS1P35568 1242 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 NFKB2Q00653 900 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 ECT2LQ008S8 904 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 MYLK3Q32MK0 819 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 FUT11Q495W5 492 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 GPR33Q49SQ1 333 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF789Q5FWF6 425 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 FOXB2Q5VYV0 432 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 GRAMD4Q6IC98 578 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 GRASPQ7Z6J2 395 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 KIAA0907Q7Z7F0 614 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 SMG7Q92540 1137 aaKnown RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 KCNJ9Q92806 393 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF707Q96C28 371 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 NSMCE3Q96MG7 304 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 CATSPER2Q96P56 530 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 SORT1Q99523 831 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 GATA5Q9BWX5 397 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 TFB2MQ9H5Q4 396 aaKnown RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 OBP2AQ9NY56 170 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 EVLQ9UI08 416 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 TAGLN3Q9UI15 199 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 INTS6Q9UL03 887 aaKnown RBP12.58□□□□□ -0.4
SHMT2-229ENST00000557348 CRYL1Q9Y2S2 319 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 PPIL1Q9Y3C6 166 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 BRCA2P51587 3418 aa12.58□□□□□ -0.4
SHMT2-229ENST00000557348 GOLGA8QA0A0J9YX86 632 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 UBA6A0AVT1 1052 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 GOLGA8OA6NCC3 632 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 SYCE1LA8MT33 242 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 WASH3PC4AMC7 463 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 SPECC1L-ADORA2AF8WAN1 911 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 GOLGA8NF8WBI6 632 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 FCHO1O14526 889 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ITM2AO43736 263 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 IPO13O94829 963 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RHOBTB1O94844 696 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 PKMP14618 531 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF37AP17032 561 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms