RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 KHDC1Q4VXA5 237 aaKnown RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PLA2G2CQ5R387 149 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 UBAP2Q5T6F2 1119 aaKnown RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ZDHHC20Q5W0Z9 365 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 TCEAL6Q6IPX3 200 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 UNC5AQ6ZN44 842 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 CENPUQ71F23 418 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PTAR1Q7Z6K3 402 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 CCDC25Q86WR0 208 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PIANPQ8IYJ0 282 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ZBED8Q8IZ13 594 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 FBXO36Q8NEA4 188 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ZNF398Q8TD17 642 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 DTX3LQ8TDB6 740 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PEX13Q92968 403 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 TCEAL3Q969E4 200 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ZNF669Q96BR6 464 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 CFAP36Q96G28 342 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 KLHDC7BQ96G42 594 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 COX14Q96I36 57 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ZSCAN5AQ9BUG6 496 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ASB8Q9H765 288 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 CAPN10Q9HC96 672 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 KCTD5Q9NXV2 234 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 SAMD15Q9P1V8 674 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 MARCH4Q9P2E8 410 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 TMEM98Q9Y2Y6 226 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 OAS3Q9Y6K5 1087 aaKnown RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 RPS6KL1Q9Y6S9 549 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 TMEM202A6NGA9 273 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 AGAP14A8MT82 685 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 MTX2O75431 263 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 LMNAP02545 664 aaKnown RBP12.72□□□□□ -0.37
SHMT2-227ENST00000557269 FUCA1P04066 466 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 CFIP05156 583 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 RETP07949 1114 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 F7P08709 466 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-227ENST00000557269 FAM153BP0C7A2 387 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 GNSP15586 552 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 TEAD1P28347 426 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 FOXN2P32314 431 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 RABIFP47224 123 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 NXPH1P58417 271 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 IRX4P78413 519 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 NFATC2Q13469 925 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 CUL1Q13616 776 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 FZD2Q14332 565 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 CRYMQ14894 314 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 KIF19Q2TAC6 998 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 FAM153CQ494X1 144 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 ZRANB3Q5FWF4 1079 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 PRAMEF14Q5SWL7 426 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 ARMC3Q5W041 872 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 PSAPL1Q6NUJ1 521 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 LDB1Q86U70 411 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-227ENST00000557269 DCLK2Q8N568 766 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 OR6P1Q8NGX9 317 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 NAT14Q8WUY8 206 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 BTN2A2Q8WVV5 523 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 GLYATL1Q969I3 302 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 LRRC39Q96DD0 335 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 HIC2Q96JB3 615 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 WDR26Q9H7D7 661 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 ZC3H7BQ9UGR2 993 aaKnown RBP12.72□□□□□ -0.37
SHMT2-227ENST00000557269 KLF15Q9UIH9 416 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 APPL1Q9UKG1 709 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 ANKRD6Q9Y2G4 727 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 PCDHGA5Q9Y5G8 931 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 PCYT1BQ9Y5K3 369 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-227ENST00000557269 SNX11Q9Y5W9 270 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 FAM169AQ9Y6X4 670 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 VPS13AQ96RL7 3174 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 GPR179Q6PRD1 2367 aa12.72□□□□□ -0.37
SHMT2-227ENST00000557269 PLXNB3Q9ULL4 1909 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 TRBV5-4A0A0C4DH59 114 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 PRR5-ARHGAP8B1AHC4 643 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 PROB1E7EW31 1015 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 EIF3HO15372 352 aaKnown RBP eCLIP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 USP1O94782 785 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 HOXC4P09017 264 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 MYCLP1P12525 358 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 HOXD12P35452 270 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 MAGEA4P43358 317 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 GPX6P59796 221 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 YPEL5P62699 121 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 PRAMEP78395 509 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 CACNG1Q06432 222 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 EIF2B5Q13144 721 aaKnown RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 NFATC4Q14934 902 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 DUOXA1Q1HG43 343 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 ZNF542PQ5EBM4 170 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 TRIM61Q5EBN2 209 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 GPRC6AQ5T6X5 926 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 STEAP4Q687X5 459 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 KIAA0930Q6ICG6 404 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 TRMT10BQ6PF06 316 aaKnown RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 SLC23A3Q6PIS1 610 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 DOK6Q6PKX4 331 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 CAPN12Q6ZSI9 719 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 ASCL5Q7RTU5 278 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms