RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SPATA9Q9BWV2 254 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 NIFKQ9BYG3 293 aaKnown RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 C6orf50Q9HD87 102 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 ENTPD7Q9NQZ7 604 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TLR9Q9NR96 1032 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 PFDN2Q9UHV9 154 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TRMT112Q9UI30 125 aaKnown RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 AURKCQ9UQB9 309 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 ANKRD6Q9Y2G4 727 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 HMX2A2RU54 273 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 ZBTB39O15060 712 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 STX7O15400 261 aaKnown RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 GLRA3O75311 464 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 UGT2B17O75795 530 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 SOX11P35716 441 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 CRKLP46109 303 aaKnown RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 UGT2B15P54855 530 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 ERVFC1P60507 584 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 INPP5AQ14642 412 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 C6orf141Q5SZD1 244 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TFAP2EQ6VUC0 442 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 RNF180Q86T96 592 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 STK32CQ86UX6 486 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 RNF135Q8IUD6 432 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 FAM71AQ8IYT1 594 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 OR4D10Q8NGI6 311 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 PTERQ96BW5 349 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TMCO6Q96DC7 493 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 NODALQ96S42 347 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 MNTQ99583 582 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 BEX2Q9BXY8 128 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 PRRG3Q9BZD7 231 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TINAGL1Q9GZM7 467 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 WDR55Q9H6Y2 383 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TMEM39AQ9NV64 488 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 HPF1Q9NWY4 346 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 REV1Q9UBZ9 1251 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 ELF5Q9UKW6 265 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 RAB23Q9ULC3 237 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 PCDHGB1Q9Y5G3 927 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 MROH5Q6ZUA9 1318 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 CICQ96RK0 1608 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 AQP12BA6NM10 295 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 H3BQ06 376 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 PPEF1O14829 653 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 NUPL2O15504 423 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 IL1R1P14778 569 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 RPL22P35268 128 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 CAPZA2P47755 286 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 AKR1D1P51857 326 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 MAP2K6P52564 334 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ABRQ12979 859 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 SAMD4BQ5PRF9 694 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 MPP7Q5T2T1 576 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 DENND5AQ6IQ26 1287 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 TIGD7Q6NT04 549 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 GPRIN3Q6ZVF9 776 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 KCTD1Q719H9 257 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 AQP12AQ8IXF9 295 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 YIPF7Q8N8F6 280 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 OR7G3Q8NG95 312 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ADAM32Q8TC27 787 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ASB12Q8WXK4 309 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ATOH1Q92858 354 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 RPL3LQ92901 407 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 C18orf25Q96B23 403 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 FAM49AQ9H0Q0 323 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 UCK1Q9HA47 277 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 PPP1R14DQ9NXH3 145 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 CD274Q9NZQ7 290 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 GLS2Q9UI32 602 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ACSL5Q9ULC5 683 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 TBC1D24Q9ULP9 559 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 TNPO3Q9Y5L0 923 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 FER1L6Q2WGJ9 1857 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 DHRS12A0PJE2 317 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 RAB19A4D1S5 217 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 LOC110117498-PIK3R3F6TDL0 507 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 BTN3A3O00478 584 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 TGFB1I1O43294 461 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 KCNQ2O43526 872 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 HSPA4LO95757 839 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 NPPAP01160 153 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 KRT1P04264 644 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ATP6V1B2P21281 511 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 HLA-FP30511 346 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 HNF4AP41235 474 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 SLC15A1P46059 708 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 MEOX2P50222 304 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 SERPINB9P50453 376 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 CNTN2Q02246 1040 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 ITPK1Q13572 414 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 KCTD2Q14681 263 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 PDK2Q15119 407 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 PUM3Q15397 648 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 AAK1Q2M2I8 961 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 C10orf62Q5T681 223 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 BEND4Q6ZU67 534 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 OR52N1Q8NH53 320 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms