RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TNIP2Q8NFZ5 429 aa14.94□□□□□ -0.02
CUX1-214ENST00000550008 IPPKQ9H8X2 491 aa14.94□□□□□ -0.02
CUX1-214ENST00000550008 IMPAD1Q9NX62 359 aa14.94□□□□□ -0.02
CUX1-214ENST00000550008 CEP290O15078 2479 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 CSKP41240 450 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 ACAP2Q15057 778 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 DENND1AQ8TEH3 1009 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 IGSF8Q969P0 613 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 SH3GL1Q99961 368 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 TRMOQ9BU70 441 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 SMG9Q9H0W8 520 aaKnown RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 KIAA1522Q9P206 1035 aaPredicted RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 LEF1Q9UJU2 399 aaPredicted RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 YIPF1Q9Y548 306 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 MBLAC1A4D2B0 266 aaPredicted RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 OTCP00480 354 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 FOLH1Q04609 750 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 DHRSXQ8N5I4 330 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 SLC2A13Q96QE2 648 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 ABCB8Q9NUT2 735 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 AP4B1Q9Y6B7 739 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 NHSQ6T4R5 1651 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 SLC22A3O75751 556 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 CYP2A6P11509 494 aaPredicted RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 CLK1P49759 484 aaKnown RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 SMARCB1Q12824 385 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 SPESP1Q6UW49 350 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 APOLD1Q96LR9 279 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 SMAD5Q99717 465 aaKnown RBP14.93□□□□□ -0.02
CUX1-214ENST00000550008 YIPF2Q9BWQ6 316 aa14.93□□□□□ -0.02
CUX1-214ENST00000550008 DHRS12A0PJE2 317 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 A8MT66 165 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 IFRD1O00458 451 aaPredicted RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 SCAMP1O15126 338 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 RNASEH1O60930 286 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 CAPN1P07384 714 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 USP46P62068 366 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 SWT1Q5T5J6 900 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 ADGRF1Q5T601 910 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 METTL21CQ5VZV1 264 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 PRMT9Q6P2P2 845 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 C17orf99Q6UX52 265 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 UBE2R2Q712K3 238 aaPredicted RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 UBR7Q8N806 425 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 UTP15Q8TED0 518 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 SCML2Q9UQR0 700 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 M0R3G1 203 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 CES1P23141 567 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 GPR1P46091 355 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 SLC18A1P54219 525 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 XKR6Q5GH73 641 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 MBLAC2Q68D91 279 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 ZMIZ2Q8NF64 920 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 PNPT1Q8TCS8 783 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 ZIC5Q96T25 663 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 WRAP53Q9BUR4 548 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 FBRSL1Q9HCM7 1045 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 HCSTQ9UBK5 93 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 AGRPO00253 132 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 MAGEC1O60732 1142 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 NBNO60934 754 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 VPS4BO75351 444 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 PPM1AP35813 382 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 ECT2LQ008S8 904 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 IL23RQ5VWK5 629 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 CLVS1Q8IUQ0 354 aaPredicted RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 ZNF276Q8N554 614 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 ZNF614Q8N883 585 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 PYCR2Q96C36 320 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 GPR22Q99680 433 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 PNPLA8Q9NP80 782 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 PRPF19Q9UMS4 504 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 CDC7O00311 574 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 HTR7P34969 479 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 MOGSQ13724 837 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 LPCAT2Q7L5N7 544 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 ZDHHC13Q8IUH4 622 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 SNRNP27Q8WVK2 155 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 DLG3Q92796 817 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 ANKRD27Q96NW4 1050 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 BRD9Q9H8M2 597 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 CHCHD3Q9NX63 227 aaKnown RBP14.92□□□□□ -0.02
CUX1-214ENST00000550008 ACTL7AQ9Y615 435 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 MAST2Q6P0Q8 1798 aa14.92□□□□□ -0.02
CUX1-214ENST00000550008 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.91□□□□□ -0.02
CUX1-214ENST00000550008 NCK1P16333 377 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 AQP1P29972 269 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 MAPK8P45983 427 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 GPR17Q13304 367 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 DPYSQ14117 519 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 RNF220Q5VTB9 566 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 LYSMD3Q7Z3D4 306 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 ANKRD46Q86W74 232 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 CMTM8Q8IZV2 173 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 CNTD1Q8N815 330 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 OSCP1Q8WVF1 389 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 OR52E6Q96RD3 313 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 RIBC2Q9H4K1 309 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 KIAA1551Q9HCM1 1747 aa14.91□□□□□ -0.02
CUX1-214ENST00000550008 SCN3BQ9NY72 215 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms