RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 EFCAB7A8K855 629 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 MATN3O15232 486 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 RAD1O60671 282 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 DNAJC6O75061 913 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 CCNCP24863 283 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 MPSTP25325 297 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 MAP4P27816 1152 aaKnown RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 CCR10P46092 362 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 ZNF165P49910 485 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 POLE2P56282 527 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 MC2RQ01718 297 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 HHEXQ03014 270 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 ITKQ08881 620 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 KCNAB2Q13303 367 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 KRT81Q14533 505 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 PAFAH1B3Q15102 231 aaKnown RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 IFI16Q16666 785 aaKnown RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 CCDC122Q5T0U0 273 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 IYDQ6PHW0 289 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 CEACAM20Q6UY09 585 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 TRIM74Q86UV6 250 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 ZNF564Q8TBZ8 553 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 SYN2Q92777 582 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 KIAA1143Q96AT1 154 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 RTP4Q96DX8 246 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 AGAP2Q99490 1192 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 HERPUD2Q9BSE4 406 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 RIOK2Q9BVS4 552 aaKnown RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 TDRD1Q9BXT4 1180 aaKnown RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 ZMYND15Q9H091 742 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 TRIT1Q9H3H1 467 aaKnown RBP12.75□□□□□ -0.37
PTCH1-218ENST00000548945 FBXO8Q9NRD0 319 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 TMEM63CQ9P1W3 806 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 ANAPC7Q9UJX3 599 aa12.75□□□□□ -0.37
PTCH1-218ENST00000548945 ZNF106Q9H2Y7 1883 aaKnown RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 KIR2DS5A0A0G2JLQ3 304 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 A0A0G2JNG1 304 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 A0A0U1RQS6 177 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 OR5K4A6NMS3 321 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 KIR2DS3K7RE56 304 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 MFSD11O43934 449 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 MAP3K6O95382 1288 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 PRLP01236 227 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 CYP1A2P05177 515 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 SKILP12757 684 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 ARSEP51690 589 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 KIR2DS5Q14953 304 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 HADHQ16836 314 aaKnown RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 ANO6Q4KMQ2 910 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 CRTC2Q53ET0 693 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 HENMT1Q5T8I9 393 aaKnown RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 HGSNATQ68CP4 663 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 ANKS6Q68DC2 871 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 MARK2Q7KZI7 788 aaKnown RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 LYSMD3Q7Z3D4 306 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 SLC9B2Q86UD5 537 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 NLGN4XQ8N0W4 816 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 NLGN4YQ8NFZ3 816 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 THAP2Q9H0W7 228 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 TBC1D29Q9UFV1 150 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 ZNHIT2Q9UHR6 403 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 CNOT6Q9ULM6 557 aaKnown RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 CHKBQ9Y259 395 aa12.74□□□□□ -0.37
PTCH1-218ENST00000548945 TMEM184BQ9Y519 407 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-218ENST00000548945 UTP20O75691 2785 aaKnown RBP12.73□□□□□ -0.37
PTCH1-218ENST00000548945 A0A1W2PQJ5 194 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 A6NCN8 305 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 MYO1FO00160 1098 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 INPP4BO15327 924 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 CLDN7O95471 211 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 ASMTLO95671 621 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 EML2O95834 649 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 F3P13726 295 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 MX2P20592 715 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 SPINT3P49223 89 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 CLCNKAP51800 687 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 MC1RQ01726 317 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 DSC2Q02487 901 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 TLE1Q04724 770 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 ABHD18Q0P651 414 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 MMRN1Q13201 1228 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 DPYSL3Q14195 570 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 IHHQ14623 411 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 NR1I3Q14994 352 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 TDRD12Q587J7 1177 aaKnown RBP12.73□□□□□ -0.37
PTCH1-218ENST00000548945 NCBP2-AS2Q69YL0 99 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 ZNF761Q86XN6 746 aaPredicted RBP12.73□□□□□ -0.37
PTCH1-218ENST00000548945 ARRDC2Q8TBH0 407 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 NAP1L5Q96NT1 182 aaPredicted RBP12.73□□□□□ -0.37
PTCH1-218ENST00000548945 SMIM14Q96QK8 99 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 WDR24Q96S15 920 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 ZNF670Q9BS34 389 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 NUP85Q9BW27 656 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 FAM83DQ9H4H8 585 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 GPN2Q9H9Y4 310 aaPredicted RBP12.73□□□□□ -0.37
PTCH1-218ENST00000548945 UCK1Q9HA47 277 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 PCDH9Q9HC56 1237 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 RBM22Q9NW64 420 aaKnown RBP eCLIP12.73□□□□□ -0.37
PTCH1-218ENST00000548945 OAS3Q9Y6K5 1087 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms