RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 METTL6Q8TCB7 284 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 ERVK-6Q9BXR3 956 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 SLC7A4O43246 635 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 PEX11BO96011 259 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 CHEK2O96017 543 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 IGLV3-25P01717 112 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 ATXN1LP0C7T5 689 aaKnown RBP13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 OXTRP30559 389 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 CORO1AP31146 461 aaKnown RBP13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 ATP5C1P36542 298 aaKnown RBP13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 ACLYP53396 1101 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 MTPNP58546 118 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 GFM2Q969S9 779 aaKnown RBP13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 TRAPPC9Q96Q05 1148 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 VPS45Q9NRW7 570 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 POLG2Q9UHN1 485 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 AGO1Q9UL18 857 aaKnown RBP13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 SCML2Q9UQR0 700 aa13.6□□□□□ -0.23
PRPF40B-209ENST00000548825 MTMR11A4FU01 709 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 AOC2O75106 756 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 ZNF623O75123 536 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 C1RP00736 705 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 TMED1Q13445 227 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 POM121L1PQ3SYA9 428 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SLC44A4Q53GD3 710 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SAMD4BQ5PRF9 694 aaKnown RBP13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 MANEALQ5VSG8 457 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SAPCD2Q86UD0 394 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 FUNDC1Q8IVP5 155 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 UMODL1-AS1Q8N2C9 162 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 PARP8Q8N3A8 854 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 POLR3BQ9NW08 1133 aaPredicted RBP13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 RAI2Q9Y5P3 530 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SBF1O95248 1867 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 KANSL1LA0AUZ9 987 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 GJA1P17302 382 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SLC11A1P49279 550 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SMYD5Q6GMV2 418 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 ZFP1Q6P2D0 407 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 TTC33Q6PID6 262 aaPredicted RBP13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 ASB9Q96DX5 294 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 TNKS2Q9H2K2 1166 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 MFSD1Q9H3U5 465 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SLC30A1Q9Y6M5 507 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 XIRP2A4UGR9 3374 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 NME4O00746 187 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SOCS2O14508 198 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 TNFAIP8O95379 198 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 CYP11A1P05108 521 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 LBPP18428 481 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 NR4A1P22736 598 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 SLC11A2P49281 568 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 ZNF135P52742 658 aaPredicted RBP13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 NDST2P52849 883 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 MYLK3Q32MK0 819 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 FUT10Q6P4F1 479 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 KIAA0408Q6ZU52 694 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 DET1Q7L5Y6 550 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 CAMK1DQ8IU85 385 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 CNTN4Q8IWV2 1026 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 MDGA1Q8NFP4 955 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 TSPAN14Q8NG11 270 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 STAG3L4Q8TBR4 150 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 WBP2Q969T9 261 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 INTS7Q9NVH2 962 aaKnown RBP13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 TMEM248Q9NWD8 314 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 OAZ3Q9UMX2 235 aa13.59□□□□□ -0.23
PRPF40B-209ENST00000548825 CEP290O15078 2479 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 DHRS12A0PJE2 317 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 C2orf78A6NCI8 922 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 UPK3BL1B0FP48 263 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 UPK3BL2E5RIL1 263 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 ACOT8O14734 319 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 PRAMEF12O95522 483 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 IL10P22301 178 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 RHOAP61586 193 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 FKBP1BP68106 108 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 NEDD8Q15843 81 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 TMEM214Q6NUQ4 689 aaKnown RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 SLC2A7Q6PXP3 512 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 MRPL10Q7Z7H8 261 aaKnown RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 GPSM1Q86YR5 675 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 METTL25Q8N6Q8 603 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 BRSK1Q8TDC3 778 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 NCLNQ969V3 563 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 FBXL20Q96IG2 436 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 KCTD14Q9BQ13 255 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 THUMPD3Q9BV44 507 aaKnown RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 TUBB1Q9H4B7 451 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 U3KQV3 271 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 LOC285556D6RIA3 1793 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 TET1Q8NFU7 2136 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 PRRG1O14668 218 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 VPS26AO75436 327 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 MBL2P11226 248 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 EFNA1P20827 205 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 MZF1P28698 734 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 SATB1Q01826 763 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 MGAT3Q09327 533 aa13.58□□□□□ -0.24
PRPF40B-209ENST00000548825 TRIP4Q15650 581 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms