RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 GPR89BP0CG08 455 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 JUPP14923 745 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 STIP1P31948 543 aaKnown RBP11.78□□□□□ -0.52
YBX3-217ENST00000546164 GNPDA1P46926 289 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 POLD2P49005 469 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 PEX6Q13608 980 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 LRP8Q14114 963 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 OASLQ15646 514 aaKnown RBP11.78□□□□□ -0.52
YBX3-217ENST00000546164 PARP6Q2NL67 630 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 PYCR3Q53H96 274 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 ZNF569Q5MCW4 686 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 CDCP2Q5VXM1 449 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 EFL1Q7Z2Z2 1120 aaKnown RBP11.78□□□□□ -0.52
YBX3-217ENST00000546164 TRIM74Q86UV6 250 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 C17orf82Q86X59 251 aaPredicted RBP11.78□□□□□ -0.52
YBX3-217ENST00000546164 SLC25A41Q8N5S1 370 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 KYQ8NBH2 561 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 OR6C4Q8NGE1 309 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 CCL4L1Q8NHW4 92 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 OR2M4Q96R27 311 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 C19orf43Q9BQ61 176 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 FICDQ9BVA6 458 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 TLR10Q9BXR5 811 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 RMI1Q9H9A7 625 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 ARNT2Q9HBZ2 717 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.78□□□□□ -0.52
YBX3-217ENST00000546164 IL17CQ9P0M4 197 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 FEZ2Q9UHY8 353 aaPredicted RBP11.78□□□□□ -0.52
YBX3-217ENST00000546164 PADI4Q9UM07 663 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 TMEM98Q9Y2Y6 226 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 ACACAQ13085 2346 aa11.78□□□□□ -0.52
YBX3-217ENST00000546164 CACNA1BQ00975 2339 aa11.77□□□□□ -0.52
YBX3-217ENST00000546164 CPED1A4D0V7 1026 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 FAM149AA5PLN7 773 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 LIASO43766 372 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 NOBOXO60393 691 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 AGTP01019 485 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 SLC4A1P02730 911 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 CAPNS1P04632 268 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 ADCY8P40145 1251 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 GDF10P55107 478 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 CTBSQ01459 385 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 MSLNQ13421 630 aaPredicted RBP11.77□□□□□ -0.53
YBX3-217ENST00000546164 SIX1Q15475 284 aaPredicted RBP11.77□□□□□ -0.53
YBX3-217ENST00000546164 TCEA2Q15560 299 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 P3H1Q32P28 736 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 ALS2CLQ60I27 953 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 KCTD11Q693B1 232 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 DOK6Q6PKX4 331 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 ARHGEF18Q6ZSZ5 1173 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 GALNT13Q8IUC8 556 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 PDCD7Q8N8D1 485 aaKnown RBP11.77□□□□□ -0.53
YBX3-217ENST00000546164 FAM46DQ8NEK8 389 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 WDR48Q8TAF3 677 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 MAPK15Q8TD08 544 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 BLOC1S5Q8TDH9 187 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 ATG4AQ8WYN0 398 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 GLYATL1Q969I3 302 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 PDLIM2Q96JY6 352 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 VPS35Q96QK1 796 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 TMEM121Q9BTD3 319 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 SPATA16Q9BXB7 569 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 TRIM39Q9HCM9 518 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 TAAR2Q9P1P5 351 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 GULP1Q9UBP9 304 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 DKK4Q9UBT3 224 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 CLCA2Q9UQC9 943 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 ZKSCAN5Q9Y2L8 839 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 ST14Q9Y5Y6 855 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 OAS3Q9Y6K5 1087 aaKnown RBP11.77□□□□□ -0.53
YBX3-217ENST00000546164 PLXNB3Q9ULL4 1909 aa11.77□□□□□ -0.53
YBX3-217ENST00000546164 NUAK1O60285 661 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 TCEA3O75764 348 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 METTL18O95568 372 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 ASMTLO95671 621 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 MT-CO3P00414 261 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 ATP1A1P05023 1023 aaKnown RBP11.76□□□□□ -0.53
YBX3-217ENST00000546164 PNLIPP16233 465 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 GLB1P16278 677 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 SPAM1P38567 509 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 CLDN6P56747 220 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 TARDBPQ13148 414 aaKnown RBP eCLIP11.76□□□□□ -0.53
YBX3-217ENST00000546164 HLTFQ14527 1009 aaKnown RBP eCLIP11.76□□□□□ -0.53
YBX3-217ENST00000546164 GSE1Q14687 1217 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 TAF1AQ15573 450 aaPredicted RBP11.76□□□□□ -0.53
YBX3-217ENST00000546164 CCNG2Q16589 344 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 C14orf28Q4W4Y0 310 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 PERM1Q5SV97 790 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 CERCAMQ5T4B2 595 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 DENND5AQ6IQ26 1287 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 DRICH1Q6PGQ1 229 aaPredicted RBP11.76□□□□□ -0.53
YBX3-217ENST00000546164 GLT6D1Q7Z4J2 308 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 PHYKPLQ8IUZ5 450 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 BRSK1Q8TDC3 778 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 LRRC45Q96CN5 670 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 TBL1YQ9BQ87 522 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 DPEP2Q9H4A9 486 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 IL26Q9NPH9 171 aa11.76□□□□□ -0.53
YBX3-217ENST00000546164 SPATS2LQ9NUQ6 558 aaKnown RBP11.76□□□□□ -0.53
YBX3-217ENST00000546164 SMOXQ9NWM0 555 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms