RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CCDC25Q86WR0 208 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 HEATR4Q86WZ0 1026 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 GPR161Q8N6U8 529 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 EIF1ADQ8N9N8 165 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 OR6P1Q8NGX9 317 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 PYROXD1Q8WU10 500 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 FUBP1Q96AE4 644 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 ZNF669Q96BR6 464 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 SGSM3Q96HU1 749 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 HIC2Q96JB3 615 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 FCRL3Q96P31 734 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 VPS35Q96QK1 796 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 FMO2Q99518 471 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 TRIM56Q9BRZ2 755 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 ASB8Q9H765 288 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ANKZF1Q9H8Y5 726 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 SAYSD1Q9NPB0 183 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 NFU1Q9UMS0 254 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 CHMP2BQ9UQN3 213 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 FAM169AQ9Y6X4 670 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 LRRK1Q38SD2 2015 aa17■□□□□ 0.31
LIG1-204ENST00000542460 ZCWPW2A0A1B0GU75 182 aa17■□□□□ 0.31
LIG1-204ENST00000542460 AGAP14A8MT82 685 aa17■□□□□ 0.31
LIG1-204ENST00000542460 CACNB4O00305 520 aaPredicted RBP17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A9O60656 530 aa17■□□□□ 0.31
LIG1-204ENST00000542460 VAPBO95292 243 aa17■□□□□ 0.31
LIG1-204ENST00000542460 MYCLP1P12525 358 aaPredicted RBP17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A6P19224 532 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A1P22309 533 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A4P22310 534 aa17■□□□□ 0.31
LIG1-204ENST00000542460 HTR1BP28222 390 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A3P35503 534 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A5P35504 534 aa17■□□□□ 0.31
LIG1-204ENST00000542460 THOP1P52888 689 aa17■□□□□ 0.31
LIG1-204ENST00000542460 CDK3Q00526 305 aa17■□□□□ 0.31
LIG1-204ENST00000542460 CACNG1Q06432 222 aa17■□□□□ 0.31
LIG1-204ENST00000542460 PTK2BQ14289 1009 aa17■□□□□ 0.31
LIG1-204ENST00000542460 FASTKD3Q14CZ7 662 aaKnown RBP17■□□□□ 0.31
LIG1-204ENST00000542460 ZRANB3Q5FWF4 1079 aa17■□□□□ 0.31
LIG1-204ENST00000542460 SPANXN3Q5MJ09 141 aa17■□□□□ 0.31
LIG1-204ENST00000542460 SLC23A3Q6PIS1 610 aa17■□□□□ 0.31
LIG1-204ENST00000542460 AFTPHQ6ULP2 937 aa17■□□□□ 0.31
LIG1-204ENST00000542460 ANKMY2Q8IV38 441 aa17■□□□□ 0.31
LIG1-204ENST00000542460 FBXO36Q8NEA4 188 aa17■□□□□ 0.31
LIG1-204ENST00000542460 OR4L1Q8NH43 312 aa17■□□□□ 0.31
LIG1-204ENST00000542460 BTN2A2Q8WVV5 523 aa17■□□□□ 0.31
LIG1-204ENST00000542460 GLYATL1Q969I3 302 aa17■□□□□ 0.31
LIG1-204ENST00000542460 WDR83Q9BRX9 315 aaKnown RBP17■□□□□ 0.31
LIG1-204ENST00000542460 LGR4Q9BXB1 951 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A7Q9HAW7 530 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A10Q9HAW8 530 aa17■□□□□ 0.31
LIG1-204ENST00000542460 UGT1A8Q9HAW9 530 aa17■□□□□ 0.31
LIG1-204ENST00000542460 GPR27Q9NS67 375 aa17■□□□□ 0.31
LIG1-204ENST00000542460 SMOXQ9NWM0 555 aa17■□□□□ 0.31
LIG1-204ENST00000542460 CNOT6Q9ULM6 557 aaKnown RBP17■□□□□ 0.31
LIG1-204ENST00000542460 CEP192Q8TEP8 1941 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 CFAP54Q96N23 3096 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 INPP4BO15327 924 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 SLC25A14O95258 325 aaPredicted RBP16.99■□□□□ 0.31
LIG1-204ENST00000542460 GOT2P00505 430 aaKnown RBP16.99■□□□□ 0.31
LIG1-204ENST00000542460 CFIP05156 583 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 KELP23276 732 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 KIAA1024LP59773 190 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 PDE1CQ14123 709 aaPredicted RBP16.99■□□□□ 0.31
LIG1-204ENST00000542460 CRYMQ14894 314 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 NFATC4Q14934 902 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 PLA2G2CQ5R387 149 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 LAYNQ6UX15 382 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 SLC22A18ASQ8N1D0 253 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.99■□□□□ 0.31
LIG1-204ENST00000542460 ULK4Q96C45 1275 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 COX14Q96I36 57 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 SLC6A14Q9UN76 642 aa16.99■□□□□ 0.31
LIG1-204ENST00000542460 SPTY2D1-AS1A0A0U1RR47 76 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 A0A1B0GVT2 93 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 OR51F1A6NGY5 319 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 GPR39O43194 453 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 TNFRSF8P28908 595 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 MAGEA4P43358 317 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 ARCN1P48444 511 aaKnown RBP16.98■□□□□ 0.31
LIG1-204ENST00000542460 NXPH1P58417 271 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 LONRF1Q17RB8 773 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 ERCC6LQ2NKX8 1250 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 TRIM61Q5EBN2 209 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 UNC5AQ6ZN44 842 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 PHYKPLQ8IUZ5 450 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 PALM2Q8IXS6 379 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 CFAP36Q96G28 342 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 FAM96AQ9H5X1 160 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 CAPN10Q9HC96 672 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 NCDNQ9UBB6 729 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.98■□□□□ 0.31
LIG1-204ENST00000542460 CRLS1Q9UJA2 301 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 TMPRSS11EQ9UL52 423 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 ANKRD6Q9Y2G4 727 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 V9GYY5 206 aaPredicted RBP16.98■□□□□ 0.31
LIG1-204ENST00000542460 SPAG17Q6Q759 2223 aa16.98■□□□□ 0.31
LIG1-204ENST00000542460 DOCK9Q9BZ29 2069 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 TRBV5-4A0A0C4DH59 114 aa16.97■□□□□ 0.31
LIG1-204ENST00000542460 PATE3B3GLJ2 98 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms