RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ASMTLO95671 621 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 MT-ND3P03897 115 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 DESP17661 470 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 TNFAIP3P21580 790 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 COL8A1P27658 744 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 DCTP40126 519 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 GARSP41250 739 aaKnown RBP11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 PTSQ03393 145 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 TRAF2Q12933 501 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 ZNF235Q14590 738 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 KIR2DS5Q14953 304 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 CA9Q16790 459 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 EIF2S3LQ2VIR3 472 aaKnown RBP11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 NADK2Q4G0N4 442 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 HSP90AA4PQ58FG1 418 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 PPP1R15BQ5SWA1 713 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 ERMARDQ5T6L9 678 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 ARMC12Q5T9G4 340 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 DNAJC24Q6P3W2 148 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 RFX8Q6ZV50 586 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 USP45Q70EL2 814 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 MON1BQ7L1V2 547 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 ZNF765Q7L2R6 523 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 RASGRP3Q8IV61 690 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 NDUFAF2Q8N183 169 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 PGBD5Q8N414 524 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 NPWQ8N729 165 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 AVL9Q8NBF6 648 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 SEC14L1Q92503 715 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 RNF31Q96EP0 1072 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 OR6C1Q96RD1 312 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 AGAP2Q99490 1192 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 TBC1D10AQ9BXI6 508 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 TRIM55Q9BYV6 548 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 GANQ9H2C0 597 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 DHX35Q9H5Z1 703 aaKnown RBP11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 MLXIPLQ9NP71 852 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 VPS18Q9P253 973 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 CPNE7Q9UBL6 633 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 PRKAB1Q9Y478 270 aa11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 ANKRD17O75179 2603 aaKnown RBP11.51□□□□□ -0.57
CLSTN3-209ENST00000539982 MED13Q9UHV7 2174 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 A0A0U1RQS6 177 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 WIPF3A6NGB9 483 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 LILRA5A6NI73 299 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 TCP11X1B4DZS4 312 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 C21orf140B9A014 251 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 SNX2O60749 519 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 SORBS2O94875 1100 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PGLSO95336 258 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PEX11BO96011 259 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 FGF5P12034 268 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 F3P13726 295 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 CTPS1P17812 591 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 CASP14P31944 242 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 HCAR3P49019 387 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PGDP52209 483 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 GFERP55789 205 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 JAM2P57087 298 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 POLR2FP61218 127 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 SH3BP2P78314 561 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 DNASE1L3Q13609 305 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 INPP5JQ15735 1006 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 CAMK4Q16566 473 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 RALGPS1Q5JS13 557 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 LRRC66Q68CR7 880 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 DCUN1D2Q6PH85 259 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 TICAM1Q8IUC6 712 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 TP53INP2Q8IXH6 220 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PRR7Q8TB68 274 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PIH1D2Q8WWB5 315 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 THAP4Q8WY91 577 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 ELMO2Q96JJ3 720 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 KCTD15Q96SI1 283 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 MGME1Q9BQP7 344 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 SLC25A23Q9BV35 468 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 ZNF768Q9H5H4 540 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 RMI1Q9H9A7 625 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 UCK1Q9HA47 277 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 KCNK6Q9Y257 313 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PCDHGA9Q9Y5G4 932 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 PCYT1BQ9Y5K3 369 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 ABCA12Q86UK0 2595 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 SHANK1Q9Y566 2161 aa11.5□□□□□ -0.57
CLSTN3-209ENST00000539982 TNRC6AQ8NDV7 1962 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 SPAG6O75602 509 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 CLDN1O95832 211 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 ATP1A1P05023 1023 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 ACP5P13686 325 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 ZNF30P17039 623 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 VARSP26640 1264 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 SEPHS1P49903 392 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 OGDHQ02218 1023 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 PAPD7Q5XG87 772 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 BBS5Q8N3I7 341 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 CT55Q8WUE5 264 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 PLEKHG4BQ96PX9 1271 aa11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 RIOK2Q9BVS4 552 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-209ENST00000539982 GPR87Q9BY21 358 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms