RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ZSCAN5CA6NGD5 496 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 IGLON5A6NGN9 336 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 AGRPO00253 132 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 MTSS1O43312 755 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 AP1G1O43747 822 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 SLU7O95391 586 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 ECEL1O95672 775 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 IFNB1P01574 187 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 ADRB3P13945 408 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 CCNCP24863 283 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 KCNJ1P48048 391 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 IL10RBQ08334 325 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 PPIDQ08752 370 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 CYP1B1Q16678 543 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 AFMIDQ63HM1 303 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 RETSATQ6NUM9 610 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 C8orf74Q6P047 294 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 DRICH1Q6PGQ1 229 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 LVRNQ6Q4G3 990 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 B4GALNT4Q76KP1 1039 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF572Q7Z3I7 529 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 SLITRK4Q8IW52 837 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 TP53INP2Q8IXH6 220 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 DCAF4L2Q8NA75 395 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 ATL2Q8NHH9 583 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 LRRN4Q8WUT4 740 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 JPH3Q8WXH2 748 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 OLFM3Q96PB7 478 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 TMEM121Q9BTD3 319 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 KLC2Q9H0B6 622 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF212Q9UDV6 495 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 FARP1Q9Y4F1 1045 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 WASF2Q9Y6W5 498 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 KDELR3O43731 214 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 SNAP91O60641 907 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 LEFTY1O75610 366 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 RNF224P0DH78 156 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 LIFP15018 202 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 RBL1P28749 1068 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 STIP1P31948 543 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 NEK3P51956 506 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 MAPK10P53779 464 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 GEMIN4P57678 1058 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 DR1Q01658 176 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF235Q14590 738 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 ESPL1Q14674 2120 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 TEX35Q5T0J7 233 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 ARTNQ5T4W7 220 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 DPY19L3Q6ZPD9 716 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 ARHGAP36Q6ZRI8 547 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 MAATS1Q7Z4T9 603 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 ATP11CQ8NB49 1132 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 DENND6BQ8NEG7 585 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 C9orf43Q8TAL5 461 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 SLC35B2Q8TB61 432 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 GRIN3AQ8TCU5 1115 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 VOPP1Q96AW1 172 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 SLC13A1Q9BZW2 595 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 NOL6Q9H6R4 1146 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 C10orf88Q9H8K7 445 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 DYRK4Q9NR20 520 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 SIRPGQ9P1W8 387 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 KLHL8Q9P2G9 620 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 UBA2Q9UBT2 640 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 IL36AQ9UHA7 158 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 AMACRQ9UHK6 382 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 APPL1Q9UKG1 709 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 DRG1Q9Y295 367 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 TTLL3Q9Y4R7 772 aa12.48□□□□□ -0.41
CLSTN3-208ENST00000538933 MAFKO60675 156 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 PRAMEF11O60813 436 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 CCL4P13236 92 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 UQCRFS1P47985 274 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 YPEL5P62699 121 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 ITKQ08881 620 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 SGCGQ13326 291 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 DHX34Q14147 1143 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 PTK2BQ14289 1009 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 C16orf72Q14CZ0 275 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 PRKD1Q15139 912 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 FAXCQ5TGI0 409 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 TMCO4Q5TGY1 634 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 MARC1Q5VT66 337 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 LEKR1Q6ZMV7 388 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 ARHGEF18Q6ZSZ5 1173 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 CCNJLQ8IV13 435 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 FAM71DQ8N9W8 422 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 GPR156Q8NFN8 814 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 PMEPA1Q969W9 287 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 ABHD17AQ96GS6 310 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 TSGA13Q96PP4 275 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 CMKLR1Q99788 373 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 CINPQ9BW66 212 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 TNKS2Q9H2K2 1166 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 SEMA6CQ9H3T2 930 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 ASIC3Q9UHC3 531 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 VPS51Q9UID3 782 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 GGT7Q9UJ14 662 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 RNF215Q9Y6U7 377 aa12.47□□□□□ -0.41
CLSTN3-208ENST00000538933 SHANK1Q9Y566 2161 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms