RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ENGP17813 658 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 TYK2P29597 1187 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ETFBP38117 255 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 CHRNA4P43681 627 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ARF5P84085 180 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ZBTB16Q05516 673 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ACTN3Q08043 901 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 PEAR1Q5VY43 1037 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 IL31Q6EBC2 164 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 PTCD2Q8WV60 388 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 FOXJ1Q92949 421 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ATXN7L3BQ96GX2 97 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 MECRQ9BV79 373 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 TSSK1BQ9BXA7 367 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ACTR5Q9H9F9 607 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 FBRSQ9HAH7 460 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 TCAF1Q9Y4C2 921 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 FREM2Q5SZK8 3169 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 KLF11O14901 512 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 GLRA3O75311 464 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 ZNF821O75541 412 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CD160O95971 181 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CTSLP07711 333 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 KCNA4P22459 653 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 DRD3P35462 400 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CSE1LP55060 971 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 LBRQ14739 615 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 SWT1Q5T5J6 900 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 TMCO4Q5TGY1 634 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 SLC23A3Q6PIS1 610 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 NCEH1Q6PIU2 408 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 LAYNQ6UX15 382 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 KYAT3Q6YP21 454 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 PGBD5Q8N414 524 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 HDDC3Q8N4P3 179 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CHST14Q8NCH0 376 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CADM4Q8NFZ8 388 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 OR2A12Q8NGT7 310 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 ISL2Q96A47 359 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 BIRC7Q96CA5 298 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 OMDQ99983 421 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 MCMBPQ9BTE3 642 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 GTPBP2Q9BX10 602 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 NUSAP1Q9BXS6 441 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 RETREG1Q9H6L5 497 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 ARNT2Q9HBZ2 717 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 MRM3Q9HC36 420 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CAPN10Q9HC96 672 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 SNX15Q9NRS6 342 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 HAUS2Q9NVX0 235 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 DCDC2Q9UHG0 476 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 FCF1Q9Y324 198 aaKnown RBP11.92□□□□□ -0.5
CLIP1-208ENST00000537004 PLXND1Q9Y4D7 1925 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 CEP295Q9C0D2 2601 aa11.92□□□□□ -0.5
CLIP1-208ENST00000537004 MED19A0JLT2 244 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TTC24A2A3L6 582 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TM4SF5O14894 197 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 FOXD2O60548 495 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 UBOX5O94941 541 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 MAGEA12P43365 314 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ABCG1P45844 678 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SCTRP47872 440 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SERPINB8P50452 374 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 IHHQ14623 411 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 DUOXA1Q1HG43 343 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 UAP1L1Q3KQV9 507 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 PPM1JQ5JR12 505 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 N4BP2L1Q5TBK1 243 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 CMC1Q7Z7K0 106 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TRIM42Q8IWZ5 723 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SLC25A41Q8N5S1 370 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 FITM2Q8N6M3 262 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 GBP7Q8N8V2 638 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ARRDC2Q8TBH0 407 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 C10orf82Q8WW14 230 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 DNASE2BQ8WZ79 361 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 MAGEH1Q9H213 219 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 PDFQ9HBH1 243 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 NPHS2Q9NP85 383 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 NSMCE4AQ9NXX6 385 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SIRPGQ9P1W8 387 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 EVLQ9UI08 416 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 EMCNQ9ULC0 261 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 PPM1HQ9ULR3 514 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 MTO1Q9Y2Z2 717 aaKnown RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 USH1CQ9Y6N9 552 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ASCC3Q8N3C0 2202 aaKnown RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 BIRC5O15392 142 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 VAPBO95292 243 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 BPGMP07738 259 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SERPINF2P08697 491 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TROVE2P10155 538 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ARCN1P48444 511 aaKnown RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 OVGP1Q12889 678 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SEPT6Q14141 434 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ZNF235Q14590 738 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 WDR45BQ5MNZ6 344 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ESRP1Q6NXG1 681 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms