RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ENPP2Q13822 863 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 GPR33Q49SQ1 333 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 LRRC66Q68CR7 880 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 ERAP2Q6P179 960 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 SYT13Q7L8C5 426 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 SNX20Q7Z614 316 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 CLEC14AQ86T13 490 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 SLC41A1Q8IVJ1 513 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 ZNF317Q96PQ6 595 aaPredicted RBP21.09■□□□□ 0.97
VPS28-212ENST00000530836 PLEKHG4BQ96PX9 1271 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 CDH19Q9H159 772 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 C2orf42Q9NWW7 574 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 B4GALT6Q9UBX8 382 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 MMP17Q9ULZ9 603 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 COMMD10Q9Y6G5 202 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 MUC22E2RYF6 1773 aaPredicted RBP21.09■□□□□ 0.97
VPS28-212ENST00000530836 C16orf96A6NNT2 1141 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 BIRC5O15392 142 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 SRP72O76094 671 aaKnown RBP21.08■□□□□ 0.97
VPS28-212ENST00000530836 APOA4P06727 396 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 TIMP2P16035 220 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 ITGALP20701 1170 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 ITGB7P26010 798 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 PTGER3P43115 390 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 CXCL12P48061 93 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 CCR3P51677 355 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 KPNA2P52292 529 aaKnown RBP21.08■□□□□ 0.97
VPS28-212ENST00000530836 ZNF789Q5FWF6 425 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 PPM1JQ5JR12 505 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 EOGTQ5NDL2 527 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 HECTD2Q5U5R9 776 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 SDE2Q6IQ49 451 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 TTC7BQ86TV6 843 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 BCAS4Q8TDM0 211 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 GABRG3Q99928 467 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 NSRP1Q9H0G5 558 aaKnown RBP21.08■□□□□ 0.97
VPS28-212ENST00000530836 CCDC68Q9H2F9 335 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 POPDC3Q9HBV1 291 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 CACNA2D2Q9NY47 1150 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 PKD2L2Q9NZM6 624 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 MID2Q9UJV3 735 aa21.08■□□□□ 0.97
VPS28-212ENST00000530836 GLYATL1P3A0A0U1RQE8 302 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 RGSL1A5PLK6 1076 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 F7P08709 466 aaPredicted RBP21.07■□□□□ 0.96
VPS28-212ENST00000530836 BPIP17213 487 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 SAT1P21673 171 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 IL12RB1P42701 662 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 SERPINB4P48594 390 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 TAS2R39P59534 338 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 PTSQ03393 145 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 SEMA3AQ14563 771 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 TSNAXIP1Q2TAA8 658 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 LDB1Q86U70 411 aaPredicted RBP21.07■□□□□ 0.96
VPS28-212ENST00000530836 ZNF366Q8N895 744 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 ACVR1CQ8NER5 493 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 DTX3LQ8TDB6 740 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 LRRC8CQ8TDW0 803 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 LPGAT1Q92604 370 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 MTG2Q9H4K7 406 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 IL26Q9NPH9 171 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 CRYL1Q9Y2S2 319 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 STON1Q9Y6Q2 735 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 C1QTNF3-AMACRE9PGA6 284 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 KPNA3O00505 521 aaPredicted RBP21.07■□□□□ 0.96
VPS28-212ENST00000530836 PRAMEF1O95521 474 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 SLC35E2BP0CK96 405 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 HLA-EP13747 358 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 CD9P21926 228 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 LHCGRP22888 699 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 SEC24CP53992 1094 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 SATB1Q01826 763 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 N4BP2L1Q5TBK1 243 aaPredicted RBP21.07■□□□□ 0.96
VPS28-212ENST00000530836 FAM46CQ5VWP2 391 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 DPPA4Q7L190 304 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 TBC1D1Q86TI0 1168 aaPredicted RBP21.07■□□□□ 0.96
VPS28-212ENST00000530836 TSPAN33Q86UF1 283 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 RAB3IL1Q8TBN0 382 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 PIP4K2CQ8TBX8 421 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 FAM129BQ96TA1 746 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 PCDH12Q9NPG4 1184 aa21.07■□□□□ 0.96
VPS28-212ENST00000530836 GOLGA8CPA6NN73 597 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 TCP11X1B4DZS4 312 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 LAMTOR5O43504 91 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 PLIN3O60664 434 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 EPHX1P07099 455 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 VIMP08670 466 aaKnown RBP21.06■□□□□ 0.96
VPS28-212ENST00000530836 WASP42768 502 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 ELP6Q0PNE2 266 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 NFATC2Q13469 925 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 CRY1Q16526 586 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 RBM20Q5T481 1227 aaKnown RBP21.06■□□□□ 0.96
VPS28-212ENST00000530836 PSAPL1Q6NUJ1 521 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 TAS2R42Q7RTR8 314 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 CPLX4Q7Z7G2 160 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 CEP97Q8IW35 865 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 ARMC2Q8NEN0 867 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 CCT8L2Q96SF2 557 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 AARSD1Q9BTE6 412 aaKnown RBP21.06■□□□□ 0.96
VPS28-212ENST00000530836 DYRK4Q9NR20 520 aa21.06■□□□□ 0.96
VPS28-212ENST00000530836 PRMT8Q9NR22 394 aaPredicted RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms