RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 TMEM74BQ9NUR3 256 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 KCTD5Q9NXV2 234 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 NINJ2Q9NZG7 142 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 NFKBIL1Q9UBC1 381 aaPredicted RBP13.63□□□□□ -0.23
CD44-224ENST00000526669 CRLS1Q9UJA2 301 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 TMPRSS11EQ9UL52 423 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 RAB23Q9ULC3 237 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 SMG5Q9UPR3 1016 aaKnown RBP13.63□□□□□ -0.23
CD44-224ENST00000526669 OTOGLQ3ZCN5 2332 aa13.63□□□□□ -0.23
CD44-224ENST00000526669 ARID1BQ8NFD5 2236 aaPredicted RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 MAGEB16A2A368 324 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 A6NNZ2 444 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 H7C0S8 307 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 MTX2O75431 263 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 TSHRP16473 764 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 PAMP19021 973 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 ITGALP20701 1170 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 PSMA3P25788 255 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 CD38P28907 300 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 NUDT1P36639 197 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 SEMA3AQ14563 771 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 KYNUQ16719 465 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 LONRF1Q17RB8 773 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 SPDYCQ5MJ68 293 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 TPRG1LQ5T0D9 272 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 ZDHHC20Q5W0Z9 365 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 TRMT10BQ6PF06 316 aaKnown RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 LDB1Q86U70 411 aaPredicted RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 TMEM135Q86UB9 458 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 KCNMB4Q86W47 210 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 RAVER1Q8IY67 606 aaKnown RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 PIANPQ8IYJ0 282 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 GPR161Q8N6U8 529 aaKnown RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 OR4L1Q8NH43 312 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 C1orf216Q8TAB5 229 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 GDAP1Q8TB36 358 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 ZNF398Q8TD17 642 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 NAT14Q8WUY8 206 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 FUBP1Q96AE4 644 aaKnown RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 CCDC97Q96F63 343 aaPredicted RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 NAT9Q9BTE0 207 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 LGR4Q9BXB1 951 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 PHACTR1Q9C0D0 580 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 SMOC1Q9H4F8 434 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 WDR26Q9H7D7 661 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 CAAP1Q9H8G2 361 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 VPS37BQ9H9H4 285 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 CATSPERZQ9NTU4 200 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 C20orf96Q9NUD7 363 aaPredicted RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 MARCH4Q9P2E8 410 aaPredicted RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 SLC17A6Q9P2U8 582 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 RAPGEFL1Q9UHV5 662 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 APPL1Q9UKG1 709 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 HS3ST3A1Q9Y663 406 aa13.62□□□□□ -0.23
CD44-224ENST00000526669 OAS3Q9Y6K5 1087 aaKnown RBP13.62□□□□□ -0.23
CD44-224ENST00000526669 MYO15AQ9UKN7 3530 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 A0A1W2PR77 199 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 BCAT2O15382 392 aaPredicted RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 ASMTLO95671 621 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 TTC4O95801 387 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 THEGLP0DJG4 465 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 ERVK-10P10266 1014 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 ARCN1P48444 511 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 CSNK1EP49674 416 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 GPX6P59796 221 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 RACK1P63244 317 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 CDK3Q00526 305 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 CACNG1Q06432 222 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 NFATC2Q13469 925 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 ITGA9Q13797 1035 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 PDE1CQ14123 709 aaPredicted RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 FASTKD1Q53R41 847 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 WDR93Q6P2C0 686 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 KYAT3Q6YP21 454 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 Q6ZSR6 202 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 SNX20Q7Z614 316 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 UHMK1Q8TAS1 419 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 GSDMBQ8TAX9 411 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 PEX13Q92968 403 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 GLYATL1Q969I3 302 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 KLHDC7BQ96G42 594 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 CDH19Q9H159 772 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 ARRDC1-AS1Q9H2J1 176 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 FSCN3Q9NQT6 498 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 PHPT1Q9NRX4 125 aaPredicted RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 IARS2Q9NSE4 1012 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 MOSPD1Q9UJG1 213 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 PILRBQ9UKJ0 227 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 CNOT6Q9ULM6 557 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 TMEM98Q9Y2Y6 226 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 FAM169AQ9Y6X4 670 aa13.61□□□□□ -0.23
CD44-224ENST00000526669 ASCC3Q8N3C0 2202 aaKnown RBP13.61□□□□□ -0.23
CD44-224ENST00000526669 A0A1B0GTW7 788 aa13.6□□□□□ -0.23
CD44-224ENST00000526669 A0A1B0GVT2 93 aa13.6□□□□□ -0.23
CD44-224ENST00000526669 PATE3B3GLJ2 98 aa13.6□□□□□ -0.23
CD44-224ENST00000526669 SCAMP1O15126 338 aa13.6□□□□□ -0.23
CD44-224ENST00000526669 CD3EAPO15446 510 aaKnown RBP13.6□□□□□ -0.23
CD44-224ENST00000526669 PIAS1O75925 651 aa13.6□□□□□ -0.23
CD44-224ENST00000526669 EPN2O95208 641 aa13.6□□□□□ -0.23
CD44-224ENST00000526669 SLC25A14O95258 325 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms