RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CNOT6Q9ULM6 557 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 PCDHGB4Q9UN71 923 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 MED16Q9Y2X0 877 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 PCDHGB5Q9Y5G0 923 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 PTGDR2Q9Y5Y4 395 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 MLYCDO95822 493 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 RPS17P08708 135 aaKnown RBP21.12■□□□□ 0.97
VPS28-205ENST00000526204 LINC00032P0C843 101 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 BMP2P12643 396 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 ELNP15502 786 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 CD9P21926 228 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 MRPL19P49406 292 aaKnown RBP21.12■□□□□ 0.97
VPS28-205ENST00000526204 LSAMPQ13449 338 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 GK3PQ14409 553 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 FUT10Q6P4F1 479 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 IYDQ6PHW0 289 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 ANKS3Q6ZW76 656 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 CHERPQ8IWX8 916 aaKnown RBP21.12■□□□□ 0.97
VPS28-205ENST00000526204 GIPC2Q8TF65 315 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 FUBP1Q96AE4 644 aaKnown RBP21.12■□□□□ 0.97
VPS28-205ENST00000526204 CEP295NLQ96MC4 621 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 SCUBE2Q9NQ36 999 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 TMCO1Q9UM00 188 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 PCDHB7Q9Y5E2 793 aa21.12■□□□□ 0.97
VPS28-205ENST00000526204 C7orf72A4D263 438 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 VPS26AO75436 327 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 ECI2O75521 394 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 CHEK2O96017 543 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 PRSS56P0CW18 603 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 CR2P20023 1033 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 CAPN3P20807 821 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 LPOP22079 712 aaPredicted RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 GRIA3P42263 894 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 TSNQ15631 228 aaKnown RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 SLC5A9Q2M3M2 681 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 MTX3Q5HYI7 312 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 BLOC1S3Q6QNY0 202 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 RSPO2Q6UXX9 243 aaPredicted RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 KCNA7Q96RP8 456 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 NACA2Q9H009 215 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 MARCH5Q9NX47 278 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 ILVBLA1L0T0 632 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 H3BNC9 293 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 NME4O00746 187 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 KLK8O60259 260 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 RGRP47804 291 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 TTPAP49638 278 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 NME5P56597 212 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 APOFQ13790 326 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 MAP7Q14244 749 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 INPP5AQ14642 412 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 PTPRNQ16849 979 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 FAM219BQ5XKK7 198 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 SLC15A3Q8IY34 581 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 MDGA1Q8NFP4 955 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 GPR21Q99679 349 aa21.11■□□□□ 0.97
VPS28-205ENST00000526204 TDRD1Q9BXT4 1180 aaKnown RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 NOL11Q9H8H0 719 aaKnown RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 SEMA4BQ9NPR2 832 aaPredicted RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 CCM2LQ9NUG4 571 aaPredicted RBP21.11■□□□□ 0.97
VPS28-205ENST00000526204 HNRNPRO43390 633 aaKnown RBP21.1■□□□□ 0.97
VPS28-205ENST00000526204 NR1H2P55055 460 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 ERMP1Q7Z2K6 904 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 PDZD8Q8NEN9 1154 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 CANT1Q8WVQ1 401 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 BIRC8Q96P09 236 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 CASD1Q96PB1 797 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 ADGRE3Q9BY15 652 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 AGO1Q9UL18 857 aaKnown RBP21.1■□□□□ 0.97
VPS28-205ENST00000526204 ACTL7AQ9Y615 435 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 ZNF839A8K0R7 811 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 OR6B1O95007 311 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 ESRRBO95718 433 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 PRLP01236 227 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 UROSP10746 265 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 PKMP14618 531 aaKnown RBP21.1■□□□□ 0.97
VPS28-205ENST00000526204 SLC11A1P49279 550 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 C11orf91Q3C1V1 193 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 NADK2Q4G0N4 442 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 RTP2Q5QGT7 225 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 HMBOX1Q6NT76 420 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 ZBTB49Q6ZSB9 765 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 AMIGO2Q86SJ2 522 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 LRRC58Q96CX6 371 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 CIB1Q99828 191 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 CCT7Q99832 543 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 HAUS8Q9BT25 410 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 TRIM54Q9BYV2 358 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 IL1RL2Q9HB29 575 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 ACTR3BQ9P1U1 418 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 GIMAP2Q9UG22 337 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 BTRCQ9Y297 605 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 GPR45Q9Y5Y3 372 aa21.1■□□□□ 0.97
VPS28-205ENST00000526204 VWA8A3KMH1 1905 aa21.09■□□□□ 0.97
VPS28-205ENST00000526204 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.09■□□□□ 0.97
VPS28-205ENST00000526204 CDC7O00311 574 aa21.09■□□□□ 0.97
VPS28-205ENST00000526204 BTN3A1O00481 513 aa21.09■□□□□ 0.97
VPS28-205ENST00000526204 AKAP10O43572 662 aa21.09■□□□□ 0.97
VPS28-205ENST00000526204 CYBBP04839 570 aa21.09■□□□□ 0.97
VPS28-205ENST00000526204 PRR35P0CG20 571 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms