RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SLC17A4Q9Y2C5 497 aa20.61■□□□□ 0.89
CD44-222ENST00000526025 SNX24Q9Y343 169 aa20.61■□□□□ 0.89
CD44-222ENST00000526025 LAMA1P25391 3075 aa20.61■□□□□ 0.89
CD44-222ENST00000526025 ASCC3Q8N3C0 2202 aaKnown RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 A0A1B0GTQ1 180 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 GPR89AB7ZAQ6 455 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 SRP72O76094 671 aaKnown RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 PRAMEF1O95521 474 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 GPR89BP0CG08 455 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 NME1P15531 152 aaKnown RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 BLKP51451 505 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 CAV1Q03135 178 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 PTPRCAPQ14761 206 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 GPR33Q49SQ1 333 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 AASDHQ4L235 1098 aaPredicted RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 CCDC38Q502W7 563 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 DNAJC21Q5F1R6 531 aaKnown RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 FAM151BQ6UXP7 276 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 PHYKPLQ8IUZ5 450 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 MINDY1Q8N5J2 469 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 NOA1Q8NC60 698 aaKnown RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 OR56A4Q8NGH8 313 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 OR13J1Q8NGT2 312 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 SCARF2Q96GP6 870 aaPredicted RBP20.6■□□□□ 0.89
CD44-222ENST00000526025 CDKN2AIPNLQ96HQ2 116 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 LGR4Q9BXB1 951 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 TRIM31Q9BZY9 425 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 TMEM9BQ9NQ34 198 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 FSCN3Q9NQT6 498 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 TREX1Q9NSU2 369 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 PCDHGB2Q9Y5G2 931 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 DGKBQ9Y6T7 804 aa20.6■□□□□ 0.89
CD44-222ENST00000526025 FAM237BA0A1B0GVD1 139 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 GOLGA8MH3BSY2 632 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 CDX4O14627 284 aaPredicted RBP20.59■□□□□ 0.89
CD44-222ENST00000526025 AVILO75366 819 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 CSF2P04141 144 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 ITGALP20701 1170 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 CCT8P50990 548 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 EIF2B5Q13144 721 aaKnown RBP20.59■□□□□ 0.89
CD44-222ENST00000526025 SLC14A1Q13336 389 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 NFATC2Q13469 925 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 PEX6Q13608 980 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 CHRNA6Q15825 494 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 ATP13A5Q4VNC0 1218 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 DNTTIP2Q5QJE6 756 aaKnown RBP20.59■□□□□ 0.89
CD44-222ENST00000526025 SNX20Q7Z614 316 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 PDIK1LQ8N165 341 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 ZNF398Q8TD17 642 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 ULK4Q96C45 1275 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 LRRC39Q96DD0 335 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 NAT9Q9BTE0 207 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 LRRC1Q9BTT6 524 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 GTPBP2Q9BX10 602 aaKnown RBP20.59■□□□□ 0.89
CD44-222ENST00000526025 CARD6Q9BX69 1037 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 FAM129AQ9BZQ8 928 aa20.59■□□□□ 0.89
CD44-222ENST00000526025 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.59■□□□□ 0.89
CD44-222ENST00000526025 ZFC3H1O60293 1989 aaKnown RBP20.58■□□□□ 0.89
CD44-222ENST00000526025 TMEM202A6NGA9 273 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 BHMG1C9JSJ3 638 aaPredicted RBP20.58■□□□□ 0.89
CD44-222ENST00000526025 H3BM21 787 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 PCDHGA12O60330 932 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 RASGRP1O95267 797 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 IVLP07476 585 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 HNRNPKP61978 463 aaKnown RBP eCLIP20.58■□□□□ 0.89
CD44-222ENST00000526025 CRADDP78560 199 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 MRPS25P82663 173 aaKnown RBP20.58■□□□□ 0.89
CD44-222ENST00000526025 ARHGAP8P85298 464 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 PPARDQ03181 441 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 ENPP7Q6UWV6 458 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 DDHD1Q8NEL9 900 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 SIGLEC10Q96LC7 697 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 PHACTR1Q9C0D0 580 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 RMI1Q9H9A7 625 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 FGF22Q9HCT0 170 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 CHRAC1Q9NRG0 131 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 GRHL1Q9NZI5 618 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 SAMD15Q9P1V8 674 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 KLQ9UEF7 1012 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 SLC30A1Q9Y6M5 507 aa20.58■□□□□ 0.89
CD44-222ENST00000526025 TRBV5-4A0A0C4DH59 114 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 INPP4BO15327 924 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 SLC25A14O95258 325 aaPredicted RBP20.57■□□□□ 0.88
CD44-222ENST00000526025 CEACAM5P06731 702 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 EPHA8P29322 1005 aaPredicted RBP20.57■□□□□ 0.88
CD44-222ENST00000526025 MC4RP32245 332 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 ARL4CP56559 192 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 SRP54P61011 504 aaKnown RBP20.57■□□□□ 0.88
CD44-222ENST00000526025 CACNG1Q06432 222 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 SHBQ15464 509 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 HIF1AQ16665 826 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 ALG11Q2TAA5 492 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 LDLRAP1Q5SW96 308 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 AFTPHQ6ULP2 937 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 TMEM135Q86UB9 458 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 CCNJLQ8IV13 435 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 PHACTR4Q8IZ21 702 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 ZNF778Q96MU6 729 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 DPH5Q9H2P9 285 aa20.57■□□□□ 0.88
CD44-222ENST00000526025 ASB8Q9H765 288 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms