RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GPR75-ASB3A0A0A6YYF3 556 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 RGSL1A5PLK6 1076 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 LIPT2A6NK58 231 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CCDC169A6NNP5 214 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 FOXO6A8MYZ6 492 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 H0YC42 278 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 UBXN8O00124 270 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CYR61O00622 381 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 RNMTO43148 476 aaKnown RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 RIPK2O43353 540 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 ADAM20O43506 726 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 SMPD2O60906 423 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 NOL3O60936 208 aaKnown RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 TSC22D2O75157 780 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 EIF2S1P05198 315 aaKnown RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 KLRC2P26717 231 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 YWHAQP27348 245 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 TMOD1P28289 359 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CIITAP33076 1130 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 GP5P40197 560 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 PSMB10P40306 273 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 BUD31P41223 144 aaPredicted RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 GABRB2P47870 512 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CPA2P48052 419 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 PTH2RP49190 550 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CENPAP49450 140 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 OLR1P78380 273 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 NHLH1Q02575 133 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 PKP1Q13835 747 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 NFE2L1Q14494 772 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 MORF4L2Q15014 288 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 ME3Q16798 604 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 LCE3BQ5TA77 95 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 GARNL3Q5VVW2 1013 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 MOB3CQ70IA8 216 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 IKBIPQ70UQ0 350 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 LPCAT2Q7L5N7 544 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 SLC46A3Q7Z3Q1 461 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 TRIM74Q86UV6 250 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 TRIM73Q86UV7 250 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 METTL23Q86XA0 190 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 SCML4Q8N228 414 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CADM4Q8NFZ8 388 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 OR4N2Q8NGD1 307 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 HASPINQ8TF76 798 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 IGFBPL1Q8WX77 278 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 FAM149B1Q96BN6 582 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 SPXQ9BT56 116 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 HEMGNQ9BXL5 484 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 FUT8Q9BYC5 575 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 GLIS2Q9BZE0 524 aaPredicted RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 MMADHCQ9H3L0 296 aaPredicted RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 TASP1Q9H6P5 420 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 MID1IP1Q9NPA3 183 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 TAS2R3Q9NYW6 316 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 EHD2Q9NZN4 543 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 CGNQ9P2M7 1197 aaKnown RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 LIMA1Q9UHB6 759 aaKnown RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 HOOK1Q9UJC3 728 aaKnown RBP4.84□□□□□ -1.63
CD44-220ENST00000525688 A4GNTQ9UNA3 340 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 LAMP3Q9UQV4 416 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 ALS2Q96Q42 1657 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 BRD4O60885 1362 aaPredicted RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 WDR17Q8IZU2 1322 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 DPPA5A6NC42 116 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 H0YAE9 185 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 EBAG9O00559 213 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 NEMFO60524 1076 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 PAGE4O60829 102 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CAMTA2O94983 1202 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 TUBB4AP04350 444 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 PRKCGP05129 697 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 IL10P22301 178 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 NFKBIAP25963 317 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 SLC16A2P36021 539 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 GDF5P43026 501 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 ASMTP46597 345 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 SULT1E1P49888 294 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CLCNKBP51801 687 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 PROK1P58294 105 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 ZXDAP98168 799 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 SLC18A2Q05940 514 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 KLF10Q13118 480 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CBX3Q13185 183 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 ZNF268Q14587 947 aaPredicted RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 LASP1Q14847 261 aaKnown RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 TMEM119Q4V9L6 283 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 SYTL3Q4VX76 610 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 TTC39AQ5SRH9 613 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CCDC183Q5T5S1 534 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 OLFM4Q6UX06 510 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 FAM57BQ71RH2 274 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 PTF1AQ7RTS3 328 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 TMC8Q8IU68 726 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 C17orf53Q8N3J3 647 aaPredicted RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 DPP10Q8N608 796 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 TDRD5Q8NAT2 981 aaKnown RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 TMEM116Q8NCL8 245 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CEP76Q8TAP6 659 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 KIAA1524Q8TCG1 905 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms