RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LRRC8BQ6P9F7 803 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 LVRNQ6Q4G3 990 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 PCGF5Q86SE9 256 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 GATAD2AQ86YP4 633 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 KLHL7Q8IXQ5 586 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 SLC25A45Q8N413 288 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 MCUQ8NE86 351 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 ZNF548Q8NEK5 533 aaPredicted RBP14.16□□□□□ -0.14
NUP54-216ENST00000514901 OR1E3Q8WZA6 343 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 PEX13Q92968 403 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 GLYATL1Q969I3 302 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 SCARF2Q96GP6 870 aaPredicted RBP14.16□□□□□ -0.14
NUP54-216ENST00000514901 TUBB2BQ9BVA1 445 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 DUSP23Q9BVJ7 150 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 IL22Q9GZX6 179 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 TRIM39Q9HCM9 518 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 FGF22Q9HCT0 170 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 BFARQ9NZS9 450 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 VPS18Q9P253 973 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 PCOLCE2Q9UKZ9 415 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 LMO7DNF2Z398 122 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 BUD23O43709 281 aaKnown RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 SDC3O75056 442 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 CBFA2T3O75081 653 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 ASMTLO95671 621 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 MLNP12872 115 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 GRIA1P42261 906 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 PTGIRP43119 386 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 DR1Q01658 176 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 CKAP4Q07065 602 aaKnown RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 PEX6Q13608 980 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 SEPT6Q14141 434 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 DHX34Q14147 1143 aaKnown RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 KCNJ11Q14654 390 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 CHRNA6Q15825 494 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 FAM151BQ6UXP7 276 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 RD3Q7Z3Z2 195 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 GKN2Q86XP6 184 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 PHYKPLQ8IUZ5 450 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 SPATA4Q8NEY3 305 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 ZNF398Q8TD17 642 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 LMX1AQ8TE12 382 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 SCG3Q8WXD2 468 aaKnown RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 CPT1BQ92523 772 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 CYP4F12Q9HCS2 524 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 NLE1Q9NVX2 485 aaPredicted RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 SMOXQ9NWM0 555 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 TRNAU1APQ9NX07 287 aaKnown RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 NLGN3Q9NZ94 848 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 ASIC3Q9UHC3 531 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 MOSPD1Q9UJG1 213 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 CDC23Q9UJX2 597 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 PNMA8BQ9ULN7 279 aaPredicted RBP14.15□□□□□ -0.14
NUP54-216ENST00000514901 KCTD3Q9Y597 815 aa14.15□□□□□ -0.14
NUP54-216ENST00000514901 DCDC2BA2VCK2 349 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 H7C0S8 307 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 VEGFDO43915 354 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 SRP72O76094 671 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 URI1O94763 535 aaPredicted RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 ANXA6P08133 673 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PTPRCAPQ14761 206 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 GPR33Q49SQ1 333 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 ATP13A5Q4VNC0 1218 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PCID2Q5JVF3 399 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 LDLRAP1Q5SW96 308 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 CERCAMQ5T4B2 595 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 DOK6Q6PKX4 331 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 ZNF572Q7Z3I7 529 aaPredicted RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 MAATS1Q7Z4T9 603 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PPIL6Q8IXY8 311 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 RBFAQ8N0V3 343 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 EID2Q8N6I1 236 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 DEFB124Q8NES8 71 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PPHLN1Q8NEY8 458 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 OR13C4Q8NGS5 318 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 OR4C6Q8NH72 309 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 KIF18AQ8NI77 898 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PTCD2Q8WV60 388 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 ULK4Q96C45 1275 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PDXPQ96GD0 296 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 CDKN2AIPNLQ96HQ2 116 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 LRRC61Q9BV99 259 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 TCEAL2Q9H3H9 227 aaPredicted RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 CARS2Q9HA77 564 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 XAB2Q9HCS7 855 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 MRPL40Q9NQ50 206 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 EVA1BQ9NVM1 165 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 PIH1D1Q9NWS0 290 aaKnown RBP14.14□□□□□ -0.15
NUP54-216ENST00000514901 UCKL1Q9NWZ5 548 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 NCKIPSDQ9NZQ3 722 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 FKBPLQ9UIM3 349 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 SUFUQ9UMX1 484 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 DOLKQ9UPQ8 538 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 TMEM98Q9Y2Y6 226 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 SPTBN2O15020 2390 aa14.14□□□□□ -0.15
NUP54-216ENST00000514901 SMAPO00193 183 aa14.13□□□□□ -0.15
NUP54-216ENST00000514901 NDC80O14777 642 aa14.13□□□□□ -0.15
NUP54-216ENST00000514901 TNFSF14O43557 240 aa14.13□□□□□ -0.15
NUP54-216ENST00000514901 KCNK5O95279 499 aa14.13□□□□□ -0.15
NUP54-216ENST00000514901 PRAMEF1O95521 474 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms