RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NSMCE1Q8WV22 266 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 WASF1Q92558 559 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SEBOXQ9HB31 216 aaPredicted RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PAG1Q9NWQ8 432 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 MORF4L1Q9UBU8 362 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 TINAGQ9UJW2 476 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PTRH2Q9Y3E5 179 aaKnown RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SNX9Q9Y5X1 595 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 LINC01553A4QN01 128 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 SYNDIG1LA6NDD5 238 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 GOLGA6L9A6NEM1 432 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 EIF4E1BA6NMX2 242 aaKnown RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 MAP2K7O14733 419 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 SMAD9O15198 467 aaKnown RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 PAPSS1O43252 624 aaPredicted RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 OAZ2O95190 189 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 ADRB2P07550 413 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 FASLGP48023 281 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 SUOXP51687 545 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 PNLIPRP2P54317 469 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 SEC61BP60468 96 aaKnown RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 MAD2L1Q13257 205 aaPredicted RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 PLCB4Q15147 1175 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 DECR1Q16698 335 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 BMP2KLQ5H9B9 411 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 GARNL3Q5VVW2 1013 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 NAA16Q6N069 864 aaPredicted RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 WDR73Q6P4I2 378 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 KRT74Q7RTS7 529 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 ADGRA1Q86SQ6 560 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 KBTBD6Q86V97 674 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 DNAAF5Q86Y56 855 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 LINC00346Q8IVM7 164 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 APPL2Q8NEU8 664 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 FAM216AQ8WUB2 273 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 PRPF31Q8WWY3 499 aaKnown RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 NTPCRQ9BSD7 190 aaKnown RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 KIFC3Q9BVG8 833 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 TMEM39BQ9GZU3 492 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 MRPL44Q9H9J2 332 aaKnown RBP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 PSD3Q9NYI0 1048 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 STK39Q9UEW8 545 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 PCDHA7Q9UN72 937 aa4.05□□□□□ -1.76
HMGB1P28-201ENST00000507778 LOC100509620A0A075B734 347 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 GLOD5A6NK44 160 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 HS3ST1O14792 307 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 AVILO75366 819 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 BMP15O95972 392 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 IGKV2-30P06310 120 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 SRCP12931 536 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 IL11P20809 199 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 SSTR2P30874 369 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 HOXA11P31270 313 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 MMP14P50281 582 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 CLCNKAP51800 687 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 ECT2LQ008S8 904 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 DDR1Q08345 913 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 DLG2Q15700 870 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 C15orf59Q2T9L4 293 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 ATP13A5Q4VNC0 1218 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 XKR9Q5GH70 373 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 PAPPA-AS1Q5QFB9 102 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 NSUN5P2Q63ZY6 315 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 AWAT2Q6E213 333 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 KRBA2Q6ZNG9 492 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 CCDC190Q86UF4 302 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 CHERPQ8IWX8 916 aaKnown RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 PGBD5Q8N414 524 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 PCDH20Q8N6Y1 951 aaKnown RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 SYT2Q8N9I0 419 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 TAAR8Q969N4 342 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 RHBDF1Q96CC6 855 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 MTBPQ96DY7 904 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 CAMK1GQ96NX5 476 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 PAFAH2Q99487 392 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 NOX4Q9NPH5 578 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 WSB2Q9NYS7 404 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 CPSF2Q9P2I0 782 aaKnown RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 DNAJB4Q9UDY4 337 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 DBNLQ9UJU6 430 aaKnown RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 PLAGL1Q9UM63 463 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 LOXL2Q9Y4K0 774 aa4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 MAGED1Q9Y5V3 778 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P28-201ENST00000507778 IGLV5-52A0A0A0MRZ9 124 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 A0A1W2PR77 199 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 TCERG1O14776 1098 aaKnown RBP4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 ADAMDEC1O15204 470 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 KCNN4O15554 427 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 ADAM20O43506 726 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 CSPG5O95196 566 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 KCNK5O95279 499 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 DNTTP04053 509 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 IGHV4-30-4P0DP06 118 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 MMP9P14780 707 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 APOBEC1P41238 236 aaKnown RBP4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 PEX5P50542 639 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 TAS2R38P59533 333 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 BNC1Q01954 994 aa4.03□□□□□ -1.76
HMGB1P28-201ENST00000507778 TRAF3Q13114 568 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms