RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-212ENST00000498041 C3orf30Q96M34 536 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 CSF3RQ99062 836 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 IFIH1Q9BYX4 1025 aaKnown RBP2.88□□□□□ -1.95
RIF1-212ENST00000498041 USP44Q9H0E7 712 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 UNC45AQ9H3U1 944 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 NOX4Q9NPH5 578 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 HINT3Q9NQE9 182 aaKnown RBP2.88□□□□□ -1.95
RIF1-212ENST00000498041 SLC6A13Q9NSD5 602 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 MIS18AQ9NYP9 233 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 ZNF224Q9NZL3 707 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 MALT1Q9UDY8 824 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 SIX4Q9UIU6 781 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 INTS6Q9UL03 887 aaKnown RBP2.88□□□□□ -1.95
RIF1-212ENST00000498041 TTC7AQ9ULT0 858 aaPredicted RBP2.88□□□□□ -1.95
RIF1-212ENST00000498041 CEPT1Q9Y6K0 416 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 NKTRP30414 1462 aaKnown RBP2.88□□□□□ -1.95
RIF1-212ENST00000498041 SCAF11Q99590 1463 aaKnown RBP2.88□□□□□ -1.95
RIF1-212ENST00000498041 NOTCH4Q99466 2003 aa2.88□□□□□ -1.95
RIF1-212ENST00000498041 MYO3AQ8NEV4 1616 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 SAA2-SAA4A0A096LPE2 208 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 GOLGA6L9A6NEM1 432 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 AKR1B15C9JRZ8 316 aaPredicted RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 SNAP23O00161 211 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 CLGNO14967 610 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 RFPL2O75678 378 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 KDM4BO94953 1096 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 RRM1P23921 792 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 PIP4K2AP48426 406 aaPredicted RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 RARSP54136 660 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 SEC61BP60468 96 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 ERVFC1-1P60608 527 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 RPL7AP62424 266 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 TMF1P82094 1093 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 OLIG2Q13516 323 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 CTF1Q16619 201 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 ALG11Q2TAA5 492 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 COL28A1Q2UY09 1125 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 EIF2S3LQ2VIR3 472 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 USP41Q3LFD5 358 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 PAPPA-AS1Q5QFB9 102 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 WDR73Q6P4I2 378 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 SLC36A4Q6YBV0 504 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 CCNI2Q6ZMN8 369 aaPredicted RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 QSOX2Q6ZRP7 698 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 HAPLN4Q86UW8 402 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 FOXRED2Q8IWF2 684 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 DIS3L2Q8IYB7 885 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 CNTROBQ8N137 903 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 NEK9Q8TD19 979 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 PSPC1Q8WXF1 523 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 RND1Q92730 232 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 TANKQ92844 425 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 SMARCE1Q969G3 411 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 LMLNQ96KR4 655 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 TMEM47Q9BQJ4 181 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 KCNN2Q9H2S1 579 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 RETREG1Q9H6L5 497 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 PPP1R3EQ9H7J1 279 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 ZNF556Q9HAH1 456 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 KIF9Q9HAQ2 790 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 PCDH9Q9HC56 1237 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 TINAGQ9UJW2 476 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 CAPN7Q9Y6W3 813 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 KDM5AP29375 1690 aaKnown RBP2.87□□□□□ -1.95
RIF1-212ENST00000498041 DLG5Q8TDM6 1919 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 KIAA1210Q9ULL0 1709 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 DLC1Q96QB1 1528 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 NEURL4Q96JN8 1562 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 A0A1W2PP64 1363 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 PARD3Q8TEW0 1356 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 TMEM2Q9UHN6 1383 aa2.87□□□□□ -1.95
RIF1-212ENST00000498041 CHD2O14647 1828 aaKnown RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 ARHGAP31Q2M1Z3 1444 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 MED14O60244 1454 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 MYOM2P54296 1465 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 NALCNQ8IZF0 1738 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 FAM237AA0A1B0GTK4 181 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 A0A1W2PRG0 241 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 NPIPB15A6NHN6 443 aaPredicted RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 HNRNPCL2B2RXH8 293 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 CCER2I3L3R5 266 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 J3KRW8 73 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 MID1O15344 667 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 TMEM63AO94886 807 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 RTN3O95197 1032 aaPredicted RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 AFPP02771 609 aaKnown RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 SPARCP09486 303 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 LINC00271P0C7V0 271 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 ZNF182P17025 639 aaPredicted RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 DDIT3P35638 169 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 CCR9P51686 369 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 HNRNPH2P55795 449 aaKnown RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 OLR1P78380 273 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 POU5F1BQ06416 359 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 TMEM115Q12893 351 aaPredicted RBP2.86□□□□□ -1.95
RIF1-212ENST00000498041 DPCR1Q3MIW9 517 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 HIST2H2BCQ6DN03 193 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 HIST2H2BDQ6DRA6 164 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 SIGIRRQ6IA17 410 aa2.86□□□□□ -1.95
RIF1-212ENST00000498041 WBP2NLQ6ICG8 309 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms