RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 OR2AK2Q8NG84 335 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 ST8SIA4Q92187 359 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 ZBTB10Q96DT7 871 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 ELP4Q96EB1 424 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 SIN3AQ96ST3 1273 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 SEC62Q99442 399 aaKnown RBP3.61□□□□□ -1.83
VPS50-219ENST00000495039 MTERF1Q99551 399 aaKnown RBP3.61□□□□□ -1.83
VPS50-219ENST00000495039 CMKLR1Q99788 373 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 FUZQ9BT04 418 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 ARHGAP26Q9UNA1 814 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 COL5A2P05997 1499 aaPredicted RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 GAGE10A6NGK3 116 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 TNPO2O14787 897 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 SYNGR3O43761 229 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 CIDEAO60543 219 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 DPEP1P16444 411 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 PAX3P23760 479 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 HOXA13P31271 388 aaPredicted RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 MRPS5P82675 430 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 EIF2S3LQ2VIR3 472 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 ZNF766Q5HY98 468 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 SLC9C2Q5TAH2 1124 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 JAKMIP3Q5VZ66 844 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 LRRC8EQ6NSJ5 796 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 ZNF790Q6PG37 636 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 C17orf99Q6UX52 265 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 METTL7BQ6UX53 244 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 TRPT1Q86TN4 253 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 NOXA1Q86UR1 476 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 TSPYL6Q8N831 410 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 BEST2Q8NFU1 509 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 FGFBP3Q8TAT2 258 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 ZNF473Q8WTR7 871 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 PIGTQ969N2 578 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 RNF125Q96EQ8 232 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 RRP36Q96EU6 259 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 POM121L2Q96KW2 1035 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 NAP1L4Q99733 375 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 SH3GL2Q99962 352 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 NEURL2Q9BR09 285 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 NUF2Q9BZD4 464 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 PAIP1Q9H074 479 aaKnown RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 JMJD4Q9H9V9 463 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 VEZTQ9HBM0 779 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 UBN1Q9NPG3 1134 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 BEX4Q9NWD9 120 aaPredicted RBP3.6□□□□□ -1.83
VPS50-219ENST00000495039 BABAM1Q9NWV8 329 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 C2orf42Q9NWW7 574 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 PPP1R14DQ9NXH3 145 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 HCN3Q9P1Z3 774 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 PEMTQ9UBM1 199 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 LOXL2Q9Y4K0 774 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 CYP46A1Q9Y6A2 500 aa3.6□□□□□ -1.83
VPS50-219ENST00000495039 CTAGE9A4FU28 777 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 TCERG1O14776 1098 aaKnown RBP3.59□□□□□ -1.83
VPS50-219ENST00000495039 SORBS2O94875 1100 aaKnown RBP3.59□□□□□ -1.83
VPS50-219ENST00000495039 URODP06132 367 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 CYC1P08574 325 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 CTAGE8P0CG41 777 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 MAOAP21397 527 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 BDKRB2P30411 391 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 DDIT3P35638 169 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 GGT5P36269 586 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 EFNB1P98172 346 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 TBX2Q13207 712 aaPredicted RBP3.59□□□□□ -1.83
VPS50-219ENST00000495039 G3BP1Q13283 466 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS50-219ENST00000495039 FAM69AQ5T7M9 428 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 TTI2Q6NXR4 508 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 FAM171BQ6P995 826 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 LINGO2Q7L985 606 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 FAM160B2Q86V87 743 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 CTAGE4Q8IX94 777 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 PPM1MQ96MI6 270 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 TRIM51Q9BSJ1 452 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 TTYH1Q9H313 450 aaPredicted RBP3.59□□□□□ -1.83
VPS50-219ENST00000495039 PREBQ9HCU5 417 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 SLC25A10Q9UBX3 287 aaPredicted RBP3.59□□□□□ -1.83
VPS50-219ENST00000495039 TMEM98Q9Y2Y6 226 aa3.59□□□□□ -1.83
VPS50-219ENST00000495039 H7C423 109 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 SH2B2O14492 632 aaPredicted RBP3.58□□□□□ -1.84
VPS50-219ENST00000495039 ZNHIT1O43257 154 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 AGAP20933 346 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 ABCD3P28288 659 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 UFM1P61960 85 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 RPL24P83731 157 aaKnown RBP3.58□□□□□ -1.84
VPS50-219ENST00000495039 TMEM187Q14656 261 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 ACAD10Q6JQN1 1059 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 RRM2BQ7LG56 351 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 TADA2BQ86TJ2 420 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 ARMC8Q8IUR7 673 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 PLD5Q8N7P1 536 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 C11orf65Q8NCR3 313 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 ZUFSPQ96AP4 578 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 KIF1BPQ96EK5 621 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 MPHOSPH8Q99549 860 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 VGLL1Q99990 258 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 RBM4BQ9BQ04 359 aaKnown RBP3.58□□□□□ -1.84
VPS50-219ENST00000495039 SLC26A6Q9BXS9 759 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 FGF22Q9HCT0 170 aa3.58□□□□□ -1.84
VPS50-219ENST00000495039 POLG2Q9UHN1 485 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms