RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 C3orf18Q9UK00 162 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 TOGARAM1Q9Y4F4 1720 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 PDLIM1O00151 329 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 IL12RB1P42701 662 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 RPS9P46781 194 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 ZNF132P52740 706 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 EPS8Q12929 822 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 DET1Q7L5Y6 550 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 AMER2Q8N7J2 671 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 CDYL2Q8N8U2 506 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 SCAIQ8N9R8 606 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 HMCESQ96FZ2 354 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 SCLYQ96I15 445 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 APOL4Q9BPW4 351 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 NUAK2Q9H093 628 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 PLCH1Q4KWH8 1693 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 NWD2Q9ULI1 1742 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 AGRPO00253 132 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 CORO1AP31146 461 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 LIMK2P53671 638 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 SEMA5AQ13591 1074 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 ZNF460Q14592 562 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 OGFOD2Q6N063 350 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 TRMT11Q7Z4G4 463 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 TRIM69Q86WT6 500 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 MTFMTQ96DP5 389 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 KLQ9UEF7 1012 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 TEX264Q9Y6I9 313 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 CENPXA8MT69 81 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 IL12AP29459 219 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 YAP1P46937 504 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 CCNIQ14094 377 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 UTP15Q8TED0 518 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 A0A0J9YYE9 177 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 FFAR3O14843 346 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 MATN3O15232 486 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 GPR42O15529 346 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 TACR2P21452 398 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 POU1F1P28069 291 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 CRY1Q16526 586 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 MCFD2Q8NI22 146 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 CCDC106Q9BWC9 280 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 SIRPGQ9P1W8 387 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 OPTCQ9UBM4 332 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 PCDHGC4Q9Y5F7 938 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 COL16A1Q07092 1604 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 DNAJA2O60884 412 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 IQCF3P0C7M6 154 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 PRIM2P49643 509 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 PITX1P78337 314 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 TBC1D21Q8IYX1 336 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 NKAPQ8N5F7 415 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 PROX1Q92786 737 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 TRAF6Q9Y4K3 522 aa16.24■□□□□ 0.19
CCDC88B-209ENST00000494080 IGKV6-21A0A0C4DH24 114 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 MGAT4DA6NG13 374 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 KCNE1P15382 129 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 TTPAP49638 278 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 TOP3AQ13472 1001 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 CUZD1Q86UP6 607 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 IRAK2O43187 625 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 CCNKO75909 580 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 PCDH8O95206 1070 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 INHAP05111 366 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 MC4RP32245 332 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 TCEAL1Q15170 157 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ZNF829Q3KNS6 432 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 AFTPHQ6ULP2 937 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 FAM151BQ6UXP7 276 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 STK40Q8N2I9 435 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 CANT1Q8WVQ1 401 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ELMO1Q92556 727 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ABCG8Q9H221 673 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ASAH2Q9NR71 780 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 TBCCD1Q9NVR7 557 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SPATA7Q9P0W8 599 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ARIH1Q9Y4X5 557 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 STRCP1A6NGW2 1772 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SIPA1L3O60292 1781 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 A0A0U1RQF3 1178 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 EIF2S1P05198 315 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 OR56A5P0C7T3 313 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ALDH4A1P30038 563 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 CDH5P33151 784 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SOX4Q06945 474 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ACOX1Q15067 660 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 RAB6CQ53S08 254 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 MARVELD2Q8N4S9 558 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 PQLC3Q8N755 202 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 RTL3Q8N8U3 475 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ZNF540Q8NDQ6 660 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 CENPNQ96H22 339 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 RAB6CQ9H0N0 254 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 GDAP2Q9NXN4 497 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 EHD3Q9NZN3 535 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SLC45A1Q9Y2W3 748 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 ADSLP30566 484 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 PFKPQ01813 784 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 GPR158Q5T848 1215 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms