RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 NLRP8Q86W28 1048 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 TMPRSS6Q8IU80 811 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 FANCMQ8IYD8 2048 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 C4orf33Q8N1A6 199 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 NXPE1Q8N323 547 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 TRAM1L1Q8N609 369 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 OTUD6BQ8N6M0 293 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 FAM76AQ8TAV0 307 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 ZNF398Q8TD17 642 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 APOPT1Q96IL0 206 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 SHDQ96IW2 340 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 MRGPRX1Q96LB2 322 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 ABCG8Q9H221 673 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 P2RY12Q9H244 342 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 SNX15Q9NRS6 342 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 FZD4Q9ULV1 537 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 SMG5Q9UPR3 1016 aaKnown RBP12.58□□□□□ -0.4
VPS52-220ENST00000493674 MRPS17Q9Y2R5 130 aaKnown RBP12.58□□□□□ -0.4
VPS52-220ENST00000493674 MED16Q9Y2X0 877 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 SLC30A1Q9Y6M5 507 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 SPAG17Q6Q759 2223 aa12.58□□□□□ -0.4
VPS52-220ENST00000493674 TMEM120BA0PK00 339 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 PLRG1O43660 514 aaKnown RBP12.57□□□□□ -0.4
VPS52-220ENST00000493674 GPR37L1O60883 481 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 IGLV3-19P01714 112 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 PYGBP11216 843 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 C6P13671 934 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 NDUFV2P19404 249 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 FDXRP22570 491 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 RPS3P23396 243 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS52-220ENST00000493674 ACRV1P26436 265 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 HPDP32754 393 aaPredicted RBP12.57□□□□□ -0.4
VPS52-220ENST00000493674 PTGER3P43115 390 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 POU4F1Q01851 419 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 DPTQ07507 201 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 CCDC15Q0P6D6 951 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ITGA9Q13797 1035 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 PDE1CQ14123 709 aaPredicted RBP12.57□□□□□ -0.4
VPS52-220ENST00000493674 GAS6Q14393 721 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ITIH4Q14624 930 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ATP13A5Q4VNC0 1218 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ZRANB3Q5FWF4 1079 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 LYPLAL1Q5VWZ2 237 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 SYT13Q7L8C5 426 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 SERPINA9Q86WD7 417 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 HDDC3Q8N4P3 179 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ARFGAP2Q8N6H7 521 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 DENND1AQ8TEH3 1009 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS52-220ENST00000493674 CLDN23Q96B33 292 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ULK4Q96C45 1275 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ERLEC1Q96DZ1 483 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ATXN7L3BQ96GX2 97 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 BIRC8Q96P09 236 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 VPS35Q96QK1 796 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 SMC6Q96SB8 1091 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 NELL2Q99435 816 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 OLFM1Q99784 485 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 OMDQ99983 421 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 AARSD1Q9BTE6 412 aaKnown RBP12.57□□□□□ -0.4
VPS52-220ENST00000493674 ZSCAN5AQ9BUG6 496 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 OSBPL6Q9BZF3 934 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 SLC6A17Q9H1V8 727 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 FAM83DQ9H4H8 585 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 FAM96AQ9H5X1 160 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 ASB8Q9H765 288 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 CNOT10Q9H9A5 744 aaKnown RBP12.57□□□□□ -0.4
VPS52-220ENST00000493674 MTF2Q9Y483 593 aaPredicted RBP12.57□□□□□ -0.4
VPS52-220ENST00000493674 CACNA1IQ9P0X4 2223 aa12.57□□□□□ -0.4
VPS52-220ENST00000493674 A0A1W2PP55 124 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 FAM47DPA6NHR8 397 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 FADS2P1A8MWK0 482 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 WNT9AO14904 365 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 SOD1P00441 154 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 DNTTP04053 509 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 MPOP05164 745 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 SLC35E2BP0CK96 405 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 GABRG2P18507 467 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CRHR1P34998 444 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 ADPRHP54922 357 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 TAS2R39P59534 338 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 RAB10P61026 200 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 TTC31Q49AM3 519 aaPredicted RBP12.56□□□□□ -0.4
VPS52-220ENST00000493674 TMEM259Q4ZIN3 620 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CTSL3PQ5NE16 218 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 HECTD2Q5U5R9 776 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 FAM45BPQ6NSW5 357 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.56□□□□□ -0.4
VPS52-220ENST00000493674 TRIM67Q6ZTA4 783 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CMC1Q7Z7K0 106 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 KBTBD6Q86V97 674 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CACUL1Q86Y37 369 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 SLC41A1Q8IVJ1 513 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CEP97Q8IW35 865 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 FAM45AQ8TCE6 357 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 SCAMP4Q969E2 229 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CCDC97Q96F63 343 aaPredicted RBP12.56□□□□□ -0.4
VPS52-220ENST00000493674 SIPA1Q96FS4 1042 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 CABS1Q96KC9 395 aa12.56□□□□□ -0.4
VPS52-220ENST00000493674 KLF6Q99612 283 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms