RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 BMP1P13497 986 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CD70P32970 193 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 ADARP55265 1226 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CACNG1Q06432 222 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 EML3Q32P44 896 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 AAGABQ6PD74 315 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 TAS2R42Q7RTR8 314 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 KREMEN2Q8NCW0 462 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 FIBINQ8TAL6 211 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CD200R1Q8TD46 325 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 NAF1Q96HR8 494 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 NSUN5Q96P11 429 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 KIAA1522Q9P206 1035 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 TRMT6Q9UJA5 497 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 HELZP42694 1942 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 SCN8AQ9UQD0 1980 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 NPEPPSL1A6NEC2 478 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 LEFTY2O00292 366 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 PPP6CO00743 305 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 PTGER3P43115 390 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 CSNK1DP48730 415 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 SQLEQ14534 574 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 TCHHL1Q5QJ38 904 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 CLYBLQ8N0X4 340 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 FBXO39Q8N4B4 442 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 HMGCLL1Q8TB92 370 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 KCNJ9Q92806 393 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 FUBP1Q96AE4 644 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 SLC46A2Q9BY10 475 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 SMG9Q9H0W8 520 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 PPM1HQ9ULR3 514 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 COMMD10Q9Y6G5 202 aa20.97■□□□□ 0.95
CCDC88B-208ENST00000492980 UBDO15205 165 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 HTRA2O43464 458 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 CLASP2O75122 1294 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 ADH1AP07327 375 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 FGF4P08620 206 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 GKP32189 559 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 RPL26P61254 145 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 HTRA4P83105 476 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 BCL2L1Q07817 233 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 PLEKHG6Q3KR16 790 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 CMPK2Q5EBM0 449 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 ELMOD1Q8N336 334 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 DNAJC9Q8WXX5 260 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 C19orf60Q96EN9 201 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 GCNAQ96QF7 691 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 CORO1BQ9BR76 489 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 P2RY12Q9H244 342 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 S100A14Q9HCY8 104 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 MID1IP1Q9NPA3 183 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 ABCB8Q9NUT2 735 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 MRGBPQ9NV56 204 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 INTS6Q9UL03 887 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 VGLL3A8MV65 326 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 BTN3A1O00481 513 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 ZNF821O75541 412 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 ESR1P03372 595 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 EEF1DP29692 281 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 MUM1Q2TAK8 710 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 GK5Q6ZS86 529 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 LARP4Q71RC2 724 aaKnown RBP eCLIP20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 SLC22A17Q8WUG5 538 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 JADE3Q92613 823 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 EFCAB1Q9HAE3 211 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 IL23AQ9NPF7 189 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 SLC30A1Q9Y6M5 507 aa20.96■□□□□ 0.95
CCDC88B-208ENST00000492980 ZNF106Q9H2Y7 1883 aaKnown RBP20.95■□□□□ 0.95
CCDC88B-208ENST00000492980 A0A0J9YYE9 177 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 SYCE1LA8MT33 242 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 ZBBXA8MT70 800 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 TRBC1P01850 177 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 MAPK8P45983 427 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 PGAM4Q8N0Y7 254 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 STK40Q8N2I9 435 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 EEF1AKMT1Q8WVE0 214 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 LINGO1Q96FE5 620 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 C3orf30Q96M34 536 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 TNKS2Q9H2K2 1166 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 ASAH2Q9NR71 780 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 DNAJC15Q9Y5T4 150 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 CCL16O15467 120 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 KLK8O60259 260 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 SOCS5O75159 536 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 CHRM3P20309 590 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 ATP6V1C1P21283 382 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 PTK2BQ14289 1009 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 KANK2Q63ZY3 851 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 BNC2Q6ZN30 1099 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 TRPC4APQ8TEL6 797 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 CLP1Q92989 425 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 LMLNQ96KR4 655 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 TTC1Q99614 292 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 NDE1Q9NXR1 346 aa20.95■□□□□ 0.94
CCDC88B-208ENST00000492980 GAPDHSO14556 408 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 AZIN1O14977 448 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 GPC4O75487 556 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 IGSF6O95976 241 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 RPS17P08708 135 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms