RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 BASP1P80723 227 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PTPRCAPQ14761 206 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 ZCCHC8Q6NZY4 707 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 CCDC137Q6PK04 289 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 FAM151BQ6UXP7 276 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PPP1R21Q6ZMI0 780 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PHYKPLQ8IUZ5 450 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 FAM181AQ8N9Y4 354 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 OR4K2Q8NGD2 314 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 OR52K1Q8NGK4 314 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 DTX3LQ8TDB6 740 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 PTCD2Q8WV60 388 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 GLYATL1Q969I3 302 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 SCARF2Q96GP6 870 aaPredicted RBP16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 TMEM168Q9H0V1 697 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 IL26Q9NPH9 171 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 TOR4AQ9NXH8 423 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 VPS18Q9P253 973 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 SAR1BQ9Y6B6 198 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 CABIN1Q9Y6J0 2220 aa16.15■□□□□ 0.18
MSH5-SAPCD1-206ENST00000491552 GLYATL1P3A0A0U1RQE8 302 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 YY2O15391 372 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 SLC25A14O95258 325 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TPH1P17752 444 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 FNTAP49354 379 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ACADVLP49748 655 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ZNF140P52738 457 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 DAB2P98082 770 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CDH17Q12864 832 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 DNAJC3Q13217 504 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 SEPT6Q14141 434 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TRIP13Q15645 432 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CHRNA6Q15825 494 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ATP13A5Q4VNC0 1218 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 C6orf132Q5T0Z8 1188 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 LVRNQ6Q4G3 990 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 MARK2Q7KZI7 788 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 SLCO6A1Q86UG4 719 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 DNAAF3Q8N9W5 541 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GRK7Q8WTQ7 553 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 SCG3Q8WXD2 468 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CAPZA3Q96KX2 299 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 APOLD1Q96LR9 279 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 VPS35Q96QK1 796 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 OR2M4Q96R27 311 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 EIF2B3Q9NR50 452 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 EVA1BQ9NVM1 165 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 PIH1D1Q9NWS0 290 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TRNAU1APQ9NX07 287 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 KCTD3Q9Y597 815 aa16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ZNF106Q9H2Y7 1883 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GAPDHSO14556 408 aaPredicted RBP16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 FANCGO15287 622 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 LDB2O43679 373 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 DKK1O94907 266 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GAS8O95995 478 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 KRT14P02533 472 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CKMT1AP12532 417 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 HADHAP40939 763 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ILF3Q12906 894 aaKnown RBP eCLIP16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ITGA9Q13797 1035 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 POU6F1Q14863 301 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 PYCR3Q53H96 274 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TAF8Q7Z7C8 310 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GALNT13Q8IUC8 556 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 OR13C4Q8NGS5 318 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CCL4L1Q8NHW4 92 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GPBAR1Q8TDU6 330 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GLMNQ92990 594 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 C19orf43Q9BQ61 176 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 BOCQ9BWV1 1114 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GSDMCQ9BYG8 508 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 RMI1Q9H9A7 625 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TRIM39Q9HCM9 518 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ARFGAP3Q9NP61 516 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CASS4Q9NQ75 786 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 NCKIPSDQ9NZQ3 722 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 FKBPLQ9UIM3 349 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GPSM3Q9Y4H4 160 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 MYLKQ15746 1914 aa16.13■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 LY6G6EA0A0G2JKS1 128 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 DNAJC6O75061 913 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 RFPL3O75679 317 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TRIM16O95361 564 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 PRAMEF1O95521 474 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ACP1P24666 158 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 PMLP29590 882 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ADCY8P40145 1251 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GRIA1P42261 906 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 VPS41P49754 854 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 DUSP3P51452 185 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 TMPRSS15P98073 1019 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 FOXC1Q12948 553 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 GPS1Q13098 491 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 NR0B2Q15466 257 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 KCTD19Q17RG1 926 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 CCDC157Q569K6 752 aa16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ZNF648Q5T619 568 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-206ENST00000491552 ADGRG6Q86SQ4 1221 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms