RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 DNAJC3Q13217 504 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ILKQ13418 452 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 DPYSQ14117 519 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 PTK2BQ14289 1009 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 RFTN1Q14699 578 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 DPYSL2Q16555 572 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 SMTNL2Q2TAL5 461 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 SPATS1Q496A3 300 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 BOLA3Q53S33 107 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 LRRC73Q5JTD7 316 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 AFMIDQ63HM1 303 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ERAP2Q6P179 960 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 BRAT1Q6PJG6 821 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 PARGQ86W56 976 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 FAM129CQ86XR2 697 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 LZTR1Q8N653 840 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 NPWQ8N729 165 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 NIPA2Q8N8Q9 360 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 NETO2Q8NC67 525 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 OR4C6Q8NH72 309 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 HCAR2Q8TDS4 363 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 RNF141Q8WVD5 230 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 CPLX3Q8WVH0 158 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 VOPP1Q96AW1 172 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 EXOC2Q96KP1 924 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 BMFQ96LC9 184 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ZNF641Q96N77 438 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 KLF6Q99612 283 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 CINPQ9BW66 212 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 THAP2Q9H0W7 228 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ATP13A3Q9H7F0 1226 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 DNAJC28Q9NX36 388 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 SIRT5Q9NXA8 310 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 NLGN3Q9NZ94 848 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 CWC15Q9P013 229 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 IFNKQ9P0W0 207 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 IP6K2Q9UHH9 426 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 IPO11Q9UI26 975 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ZZEF1O43149 2961 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 TSPAN11A1L157 253 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 ZC3H12DA2A288 527 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 FAM149AA5PLN7 773 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 MYO1FO00160 1098 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 TRIM38O00635 465 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 SCAMP1O15126 338 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 FFAR2O15552 330 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 SIGLEC6O43699 453 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 CSF2P04141 144 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 CAPNS1P04632 268 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 GYPCP04921 128 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 CYP1A2P05177 515 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 JUPP14923 745 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 NME1P15531 152 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 IL1R2P27930 398 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 SERPINA4P29622 427 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 IGFALSP35858 605 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 CSNK1DP48730 415 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 RENBPP51606 427 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 THOP1P52888 689 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 PFN3P60673 137 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 DAB2P98082 770 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 IL10RBQ08334 325 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 NSUN2Q08J23 767 aaKnown RBP eCLIP6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 PDE1CQ14123 709 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 TRIM14Q14142 442 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 FZD2Q14332 565 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 UGP2Q16851 508 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 TMEM52BQ4KMG9 183 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 ZNF542PQ5EBM4 170 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 TMCO4Q5TGY1 634 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 TMCO3Q6UWJ1 677 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 POLNQ7Z5Q5 900 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 PROSER1Q86XN7 944 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 ARHGAP12Q8IWW6 846 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 SLC25A45Q8N413 288 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 BTN2A2Q8WVV5 523 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 TEKT4Q8WW24 435 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 HSPH1Q92598 858 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 CENPTQ96BT3 561 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 WRAP53Q9BUR4 548 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 NUP85Q9BW27 656 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 USP29Q9HBJ7 922 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 PCDH12Q9NPG4 1184 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 UCKL1Q9NWZ5 548 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 DKK4Q9UBT3 224 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 ANAPC7Q9UJX3 599 aa6.84□□□□□ -1.31
CCDC88A-213ENST00000476903 RP1P56715 2156 aa6.84□□□□□ -1.32
CCDC88A-213ENST00000476903 ASXL3Q9C0F0 2248 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 A0A087X0T9 212 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 TRABD2BA6NFA1 517 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 TMEM110-MUSTN1A8MSY1 372 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 K7ESM1 405 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 AQP9O43315 295 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CBFA2T2O43439 604 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 NRDCO43847 1150 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 BUB1BO60566 1050 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 FAM228BP0C875 321 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CKMT1AP12532 417 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms