RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 HAPLN4Q86UW8 402 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 WDR5BQ86VZ2 330 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 TBC1D21Q8IYX1 336 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 SFRP1Q8N474 314 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 HDDC3Q8N4P3 179 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 PAQR4Q8N4S7 273 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 AFAP1Q8N556 730 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 FAM47BQ8NA70 645 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 KDM1BQ8NB78 822 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 ZBTB44Q8NCP5 570 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF540Q8NDQ6 660 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 CAGE1Q8TC20 777 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 FAR1Q8WVX9 515 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 SYAP1Q96A49 352 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 RRNAD1Q96FB5 475 aaKnown RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 UROC1Q96N76 676 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 CAMK1GQ96NX5 476 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 NEK1Q96PY6 1258 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 GAL3ST4Q96RP7 486 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 RUFY1Q96T51 708 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 SCNM1Q9BWG6 230 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 GATA5Q9BWX5 397 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 GPR88Q9GZN0 384 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 SLCO5A1Q9H2Y9 848 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 MRPL44Q9H9J2 332 aaKnown RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 GOLGA2P5Q9HBQ8 144 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 EPB41L5Q9HCM4 733 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 PAPOLBQ9NRJ5 636 aaKnown RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 IARS2Q9NSE4 1012 aaKnown RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 ERAP1Q9NZ08 941 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 CNIH4Q9P003 139 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 AURKCQ9UQB9 309 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 LSM4Q9Y4Z0 139 aaKnown RBP4.22□□□□□ -1.73
VPS13D-207ENST00000476169 CLDN16Q9Y5I7 305 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 NFS1Q9Y697 457 aa4.22□□□□□ -1.73
VPS13D-207ENST00000476169 A0A0A0MQY5 61 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 A0A1W2PR77 199 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CXorf65A6NEN9 183 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 OOEPA6NGQ2 149 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CBY3A6NI87 242 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 TARM1B6A8C7 271 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 AKR1B15C9JRZ8 316 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 H0YIN7 160 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 IFIT3O14879 490 aaKnown RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 EIF3DO15371 548 aaKnown RBP eCLIP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 KLKB1P03952 638 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 RLN1P04808 185 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ZFYP08048 801 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CHRM5P08912 532 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CD63P08962 238 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 OR52Z1P0C646 297 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 UROSP10746 265 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ST6GAL1P15907 406 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 PFKFB1P16118 471 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 TFEBP19484 476 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 KCNJ1P48048 391 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CACNA2D1P54289 1103 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 SNU13P55769 128 aaKnown RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 TAS2R40P59535 323 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ASIC1P78348 528 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ITGADQ13349 1161 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 KBTBD12Q3ZCT8 623 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 C6orf141Q5SZD1 244 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 SHEQ5VZ18 495 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 FAM91A1Q658Y4 838 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ISLR2Q6UXK2 745 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 QSOX2Q6ZRP7 698 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ZBTB49Q6ZSB9 765 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CCDC25Q86WR0 208 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CNTN4Q8IWV2 1026 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 HACE1Q8IYU2 909 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 SAMD14Q8IZD0 417 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CLYBLQ8N0X4 340 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CADM3Q8N126 398 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 LPCAT1Q8NF37 534 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 GRAPLQ8TC17 118 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 ZFAND2BQ8WV99 257 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 LARP4BQ92615 738 aaKnown RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 PIGKQ92643 395 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 KAT2BQ92831 832 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 TRIM44Q96DX7 344 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 P2RY11Q96G91 374 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 VPS39Q96JC1 886 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 RITA1Q96K30 269 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 RMDN2Q96LZ7 410 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 GDAP1L1Q96MZ0 367 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 FRG2BQ96QU4 278 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 FCRL5Q96RD9 977 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 PARK7Q99497 189 aaKnown RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 SEPT5Q99719 369 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 HNRNPABQ99729 332 aaKnown RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 EGFL8Q99944 293 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 MXRA8Q9BRK3 442 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 DUSP26Q9BV47 211 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 TEX13BQ9BXU2 312 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 SPATC1LQ9H0A9 340 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 TOR3AQ9H497 397 aa4.21□□□□□ -1.74
VPS13D-207ENST00000476169 NOL11Q9H8H0 719 aaKnown RBP4.21□□□□□ -1.74
VPS13D-207ENST00000476169 CHMP1AQ9HD42 196 aaPredicted RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms