RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 AGAP7PQ5VUJ5 663 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 ZNF324BQ6AW86 544 aaPredicted RBP7.94□□□□□ -1.14
USP54-211ENST00000474929 DNAAF5Q86Y56 855 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 RBM12BQ8IXT5 1001 aaKnown RBP7.94□□□□□ -1.14
USP54-211ENST00000474929 SIMC1Q8NDZ2 872 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 PHF10Q8WUB8 498 aaKnown RBP7.94□□□□□ -1.14
USP54-211ENST00000474929 NACC2Q96BF6 587 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 NUS1Q96E22 293 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 EEF2KMTQ96G04 330 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 SCARF2Q96GP6 870 aaPredicted RBP7.94□□□□□ -1.14
USP54-211ENST00000474929 CNDP1Q96KN2 507 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 AGAP4Q96P64 663 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 TUBGCP5Q96RT8 1024 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 RAB33BQ9H082 229 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 CHST8Q9H2A9 424 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 FANCEQ9HB96 536 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 ATP13A2Q9NQ11 1180 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 ANLNQ9NQW6 1124 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 COQ3Q9NZJ6 369 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 COX16Q9P0S2 106 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 SEC14L3Q9UDX4 400 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 EPHA6Q9UF33 1036 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 MDC1Q14676 2089 aaKnown RBP7.93□□□□□ -1.14
USP54-211ENST00000474929 MEN1O00255 615 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 PDXKO00764 312 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 CALUO43852 315 aaPredicted RBP7.93□□□□□ -1.14
USP54-211ENST00000474929 SLC19A2O60779 497 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 UNC5CO95185 931 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 JCHAINP01591 159 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 PYGLP06737 847 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 F3P13726 295 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 IGFBP2P18065 325 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 PCSK6P29122 969 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 GGCXP38435 758 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 MAPKAPK2P49137 400 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 POLR2LP62875 67 aaKnown RBP7.93□□□□□ -1.14
USP54-211ENST00000474929 NME3Q13232 169 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 SSPNQ14714 243 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 NCF4Q15080 339 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 CYP2A13Q16696 494 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 INO80DQ53TQ3 878 aaPredicted RBP7.93□□□□□ -1.14
USP54-211ENST00000474929 IYDQ6PHW0 289 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 LIPIQ6XZB0 460 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 DSELQ8IZU8 1212 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 PAF1Q8N7H5 531 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 SLC41A2Q96JW4 573 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 C1orf74Q96LT6 269 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 MAGEB10Q96LZ2 347 aaPredicted RBP7.93□□□□□ -1.14
USP54-211ENST00000474929 PCMTD1Q96MG8 357 aaPredicted RBP7.93□□□□□ -1.14
USP54-211ENST00000474929 SLC2A13Q96QE2 648 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 ZYG11BQ9C0D3 744 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 MAGEH1Q9H213 219 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 KBTBD4Q9NVX7 518 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 ABI3Q9P2A4 366 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 CPNE7Q9UBL6 633 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 SH3BGRL2Q9UJC5 107 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 PIKFYVEQ9Y2I7 2098 aa7.93□□□□□ -1.14
USP54-211ENST00000474929 PVALEFA0A1B0GWK0 134 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TLCD2A6NGC4 264 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TMCC1O94876 653 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 CD160O95971 181 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 IFNA2P01563 188 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 MYBL2P10244 700 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 SERPINA4P29622 427 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 OTX2P32243 289 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 SPAM1P38567 509 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TUBB4BP68371 445 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 PPP3CAQ08209 521 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 MYBPHQ13203 477 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 GPS2Q13227 327 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TUBB2AQ13885 445 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 ACOX1Q15067 660 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 HIF1AQ16665 826 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 C1orf220Q5T0J3 134 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 ATXN7L2Q5T6C5 722 aaPredicted RBP7.92□□□□□ -1.14
USP54-211ENST00000474929 AFMIDQ63HM1 303 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 PLEKHA7Q6IQ23 1121 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 PODNL1Q6PEZ8 512 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 KLHL35Q6PF15 583 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 DPPA4Q7L190 304 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 PHYKPLQ8IUZ5 450 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TRIM48Q8IWZ4 208 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 PHC2Q8IXK0 858 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 CARFQ8N187 725 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 ACRBPQ8NEB7 543 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 RNF31Q96EP0 1072 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 VPS50Q96JG6 964 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 CD180Q99467 661 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 SMR3AQ99954 134 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TUBB2BQ9BVA1 445 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TBC1D10AQ9BXI6 508 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 TKTL2Q9H0I9 626 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 SUV39H2Q9H5I1 410 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 WDCPQ9H6R7 721 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 MMRN2Q9H8L6 949 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 POT1Q9NUX5 634 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 DNAJB12Q9NXW2 375 aaKnown RBP7.92□□□□□ -1.14
USP54-211ENST00000474929 PPP4R2Q9NY27 417 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 SEMA5BQ9P283 1151 aa7.92□□□□□ -1.14
USP54-211ENST00000474929 PPARGC1AQ9UBK2 798 aaKnown RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms