RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SPOCD1Q6ZMY3 1216 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 USP53Q70EK8 1073 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 KDELC2Q7Z4H8 507 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 TMC3Q7Z5M5 1100 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 NT5DC3Q86UY8 548 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 GPR26Q8NDV2 337 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 TEKT5Q96M29 485 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 NUDT22Q9BRQ3 303 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 ADGRE3Q9BY15 652 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 STRADBQ9C0K7 418 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 GLOD4Q9HC38 313 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 ACSL6Q9UKU0 697 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 LOXL2Q9Y4K0 774 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 ADGRG1Q9Y653 693 aa18.42■□□□□ 0.54
COL7A1-209ENST00000474432 ATMQ13315 3056 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 KALRNO60229 2985 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 TEX51A0A1B0GUA7 166 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 EFSO43281 561 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 SPOPO43791 374 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 C1QL1O75973 258 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 CPNE6O95741 557 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 PRB1P04280 392 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 ALDH4A1P30038 563 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 TMPRSS3P57727 454 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 CDK18Q07002 472 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 SQSTM1Q13501 440 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 GALNT13Q8IUC8 556 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 TRIM5Q9C035 493 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 ZFYVE1Q9HBF4 777 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 MAGEE1Q9HCI5 957 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 PKD2L2Q9NZM6 624 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 SEPT10Q9P0V9 454 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 NFKBIL1Q9UBC1 381 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-209ENST00000474432 PISDQ9UG56 409 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 SHOC2Q9UQ13 582 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 SPO11Q9Y5K1 396 aa18.41■□□□□ 0.54
COL7A1-209ENST00000474432 hCG_1818297A0A087WSY0 165 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 IGHV1OR21-1A0A087WYE8 117 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 A6NCN8 305 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 RHPN2P1A8MT19 583 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 AGRPO00253 132 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 PSTPIP1O43586 416 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 CST8O60676 142 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 ASMTLO95671 621 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 CSF2RBP32927 897 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 GPR3P46089 330 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 NR2C2P49116 596 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 UCNP55089 124 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 LRP8Q14114 963 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 PCSK7Q16549 785 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 AMZ1Q400G9 498 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-209ENST00000474432 ZNF648Q5T619 568 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-209ENST00000474432 ARHGAP40Q5TG30 622 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 NKAIN2Q5VXU1 208 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 SFRP1Q8N474 314 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 CCHCR1Q8TD31 782 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 SLC37A2Q8TED4 501 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 ZNF711Q9Y462 761 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 PCDHA13Q9Y5I0 950 aa18.4■□□□□ 0.54
COL7A1-209ENST00000474432 TRBV23OR9-2A0A075B6M9 112 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 IGHV5-10-1A0A0J9YXX1 117 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 RCCD1A6NED2 376 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 AURKAO14965 403 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 NVLO15381 856 aaKnown RBP18.39■□□□□ 0.53
COL7A1-209ENST00000474432 FECHP22830 423 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 FASLGP48023 281 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 DCDC1P59894 354 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 TFDP2Q14188 446 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 TGIF1Q15583 401 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 CLPPQ16740 277 aaPredicted RBP18.39■□□□□ 0.53
COL7A1-209ENST00000474432 BROXQ5VW32 411 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 KDELC1Q6UW63 502 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 PIM3Q86V86 326 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 KATNAL2Q8IYT4 538 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 SLC39A7Q92504 469 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 KRT35Q92764 455 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 CCDC97Q96F63 343 aaPredicted RBP18.39■□□□□ 0.53
COL7A1-209ENST00000474432 HERPUD2Q9BSE4 406 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 ARFGAP3Q9NP61 516 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 UBP1Q9NZI7 540 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 ATXN10Q9UBB4 475 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 TBC1D29Q9UFV1 150 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 ZNHIT2Q9UHR6 403 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 TMPRSS11EQ9UL52 423 aa18.39■□□□□ 0.53
COL7A1-209ENST00000474432 A0A0A6YYK5 440 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 LOC285095A0A1B0GVY8 99 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 C9orf172C9J069 976 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 K7ENP7 123 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 TK2O00142 265 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 NUAK1O60285 661 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 PMPCBO75439 489 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 NDST3O95803 873 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 CCL4P13236 92 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 ZNF8P17098 575 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 ARSDP51689 593 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 VAC14Q08AM6 782 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 NOMO1Q15155 1222 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 MAP9Q49MG5 647 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 TFDP3Q5H9I0 405 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms