RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ANKRD66B4E2M5 251 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 LIPCP11150 499 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 ARHGAP25P42331 645 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 CFHR1Q03591 330 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 GALNT3Q14435 633 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 CLPPQ16740 277 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 TAF1BQ53T94 588 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 NPNTQ6UXI9 565 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 USP53Q70EK8 1073 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 RCBTB1Q8NDN9 531 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 CCDC74BQ96LY2 380 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 SEMA4CQ9C0C4 833 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 BRD8Q9H0E9 1235 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 ZNHIT6Q9NWK9 470 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 VPS18Q9P253 973 aa18.65■□□□□ 0.58
CCDC88B-206ENST00000473405 SPTA1P02549 2419 aa18.64■□□□□ 0.58
CCDC88B-206ENST00000473405 IGHV1OR21-1A0A087WYE8 117 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 KRT1P04264 644 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 CCL4P13236 92 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 FASLGP48023 281 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 MAPK10P53779 464 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 NKAIN2Q5VXU1 208 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 LYSMD3Q7Z3D4 306 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 RHOT2Q8IXI1 618 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 SFRP1Q8N474 314 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 SLC37A2Q8TED4 501 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 USP7Q93009 1102 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 IMP4Q96G21 291 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 MLPHQ9BV36 600 aaPredicted RBP18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 PRKAB1Q9Y478 270 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 FLNCQ14315 2725 aa18.64■□□□□ 0.57
CCDC88B-206ENST00000473405 APOL1O14791 398 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 HGSO14964 777 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 LIMK2P53671 638 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 AP1B1Q10567 949 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 BIRC2Q13490 618 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 SQSTM1Q13501 440 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 LY6DQ14210 128 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 LRRC38Q5VT99 294 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 ZFAND4Q86XD8 727 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 OR4D9Q8NGE8 314 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 PMEPA1Q969W9 287 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 TADA1Q96BN2 335 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 CCDC42Q96M95 316 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 ADGRE3Q9BY15 652 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 FAM83DQ9H4H8 585 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 PKD2L2Q9NZM6 624 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 TMEM9Q9P0T7 183 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNHIT2Q9UHR6 403 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 HYOU1Q9Y4L1 999 aa18.63■□□□□ 0.57
CCDC88B-206ENST00000473405 RGSL1A5PLK6 1076 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 A6NCN8 305 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 ZW10O43264 779 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 ASMTLO95671 621 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 PIRTP0C851 137 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 THRAP10827 490 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 ARSDP51689 593 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 PDK1Q15118 436 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 TCEAL1Q15170 157 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 SKOR2Q2VWA4 1001 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 B4GALNT4Q76KP1 1039 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 CHST15Q7LFX5 561 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNF761Q86XN6 746 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 DTX1Q86Y01 620 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 CCHCR1Q8TD31 782 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 AGAP3Q96P47 875 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 B3GNT4Q9C0J1 378 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 KCNK4Q9NYG8 393 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 TBC1D29Q9UFV1 150 aa18.62■□□□□ 0.57
CCDC88B-206ENST00000473405 ZNF106Q9H2Y7 1883 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 PPP1R12AO14974 1030 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 TPM1P09493 284 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 FGF3P11487 239 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 PLA2G2AP14555 144 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 NOP2P46087 812 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 DYNLT1P63172 113 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 GPLD1P80108 840 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 TAZQ16635 292 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 MFSD7Q6UXD7 560 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 KDELC2Q7Z4H8 507 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 VASH2Q86V25 355 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 RHOT1Q8IXI2 618 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 RNF214Q8ND24 703 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 GPR26Q8NDV2 337 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 RNF25Q96BH1 459 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 SLC25A51Q9H1U9 297 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 TSPY26PQ9H489 355 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 RMI1Q9H9A7 625 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 ZFYVE1Q9HBF4 777 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 WDR70Q9NW82 654 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 AKAP7Q9P0M2 348 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 SEPT10Q9P0V9 454 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 NFKBIL1Q9UBC1 381 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 KCNK6Q9Y257 313 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 ADGRG1Q9Y653 693 aa18.61■□□□□ 0.57
CCDC88B-206ENST00000473405 TRBV23OR9-2A0A075B6M9 112 aa18.6■□□□□ 0.57
CCDC88B-206ENST00000473405 ACP5P13686 325 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms