RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SERPINA9Q86WD7 417 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 KREMEN2Q8NCW0 462 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 NOL11Q9H8H0 719 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 TRPC5OSA6NMA1 111 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 TLL1O43897 1013 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 VNN2O95498 520 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 NFKBIAP25963 317 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 PSME3P61289 254 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ABRQ12979 859 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 NFYCQ13952 458 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 TRMT5Q32P41 509 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF549Q6P9A3 640 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 EPGNQ6UW88 154 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 TMEM25Q86YD3 366 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 TWIST2Q8WVJ9 160 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 PPM1MQ96MI6 270 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 C2orf49Q9BVC5 232 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ACAT2Q9BWD1 397 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 RAD54BQ9Y620 910 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 HIDE1A8MVS5 230 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ECI2O75521 394 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 MMP2P08253 660 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 HLA-EP13747 358 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ITGB8P26012 769 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 RNF220Q5VTB9 566 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 FAM45BPQ6NSW5 357 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 OR52B6Q8NGF0 335 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 OR6Y1Q8NGX8 325 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 FAM45AQ8TCE6 357 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 MED8Q96G25 268 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 MYO19Q96H55 970 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 MAGEH1Q9H213 219 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 EPS15L1Q9UBC2 864 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ANKRD6Q9Y2G4 727 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 A0A087X1B8 175 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 A0A088AWK7 358 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 F8W8V4 182 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 KLF11O14901 512 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 AZIN1O14977 448 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 SBK3P0C264 359 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 TPD52P55327 224 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 OTUD3Q5T2D3 398 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC22A15Q8IZD6 547 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 FOXJ1Q92949 421 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 LRCH3Q96II8 777 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 FEM1AQ9BSK4 669 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 NSUN3Q9H649 340 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 ASAH2Q9NR71 780 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 RGPD3A6NKT7 1758 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 RGPD4Q7Z3J3 1758 aa13.66□□□□□ -0.22
CCDC88A-211ENST00000471947 TGM5O43548 720 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 TIPRLO75663 272 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 LMNAP02545 664 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ATXN1LP0C7T5 689 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 NEK2P51955 445 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 MAPK10P53779 464 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 SH3BP2P78314 561 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ANKRD46Q86W74 232 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 STAG3L4Q8TBR4 150 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 VN1R3Q9BXE9 311 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 AKTIPQ9H8T0 292 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 CXXC1Q9P0U4 656 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 PRKAB1Q9Y478 270 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 E7ENX8 843 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC7A4O43246 635 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ITGALP20701 1170 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 KPNA1P52294 538 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF135P52742 658 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 AQP4P55087 323 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 CLCQ05315 142 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 TEAD2Q15562 447 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 CHRNA6Q15825 494 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 GRASPQ7Z6J2 395 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ISCA2Q86U28 154 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ADGRG2Q8IZP9 1017 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 LSMEM2Q8N112 164 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 C19orf60Q96EN9 201 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 NSMCE3Q96MG7 304 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 TMEM74Q96NL1 305 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 THUMPD3Q9BV44 507 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 EBF3Q9H4W6 596 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 IGSF5Q9NSI5 407 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 DTNAQ9Y4J8 743 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 HNRNPCL1O60812 293 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 IGLV3-25P01717 112 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ADRA1AP35348 466 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 DGKQP52824 942 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ARF5P84085 180 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 PLOD1Q02809 727 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 KRT72Q14CN4 511 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 AAK1Q2M2I8 961 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 TRAF7Q6Q0C0 670 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 C16orf89Q6UX73 402 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 SZRD1Q7Z422 152 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 KLHL32Q96NJ5 620 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ACTR8Q9H981 624 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 SYTL2Q9HCH5 934 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 ARL15Q9NXU5 204 aa13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-211ENST00000471947 MCM8Q9UJA3 840 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms