RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 BNIP2Q12982 314 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 C6orf141Q5SZD1 244 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 KIAA0408Q6ZU52 694 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 COLGALT2Q8IYK4 626 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 C8orf59Q8N0T1 100 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 MINDY1Q8N5J2 469 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 PTGR2Q8N8N7 351 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 ESAMQ96AP7 390 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 SPC25Q9HBM1 224 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 SNTG2Q9NY99 539 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 KIAA1257Q9ULG3 409 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 MAGEB16A2A368 324 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 UBXN8O00124 270 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 NDUFS2O75306 463 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 USP2O75604 605 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 CDK14O94921 469 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 CHEK2O96017 543 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 C1RP00736 705 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 ALPLP05186 524 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 GPIP06744 558 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 PGK2P07205 417 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 GTF2E2P29084 291 aaKnown RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 SERPINB1P30740 379 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 FMO3P31513 532 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 COPZ1P61923 177 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 CAMK2BQ13554 666 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 DAG1Q14118 895 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 PSMD5Q16401 504 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 PFKFB4Q16877 469 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 ZNF678Q5SXM1 525 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 NLGN1Q8N2Q7 840 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 FAM83FQ8NEG4 500 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 C12orf42Q96LP6 360 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 TEKT5Q96M29 485 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 TEPSINQ96N21 525 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 SEMA4BQ9NPR2 832 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 CACNG4Q9UBN1 327 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 POLG2Q9UHN1 485 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 BOLA1Q9Y3E2 137 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 PSME4Q14997 1843 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 NRCAMQ92823 1304 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 A8MV72 311 aaPredicted RBP11.65□□□□□ -0.54
CPSF3-202ENST00000460593 KCNK2O95069 426 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 UGT2B4P06133 528 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 LTA4HP09960 611 aaKnown RBP11.65□□□□□ -0.54
CPSF3-202ENST00000460593 CYP4B1P13584 511 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 PRDX3P30048 256 aaKnown RBP11.65□□□□□ -0.54
CPSF3-202ENST00000460593 ADRA1BP35368 520 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 HADHAP40939 763 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 MTHFRP42898 656 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 LRIT3Q3SXY7 679 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 PCID2Q5JVF3 399 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 GLYATQ6IB77 296 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 NAPEPLDQ6IQ20 393 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 FRA10AC1Q70Z53 315 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 TBC1D21Q8IYX1 336 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 TBL1YQ9BQ87 522 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 WDR12Q9GZL7 423 aaKnown RBP11.65□□□□□ -0.54
CPSF3-202ENST00000460593 KLK14Q9P0G3 267 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 ERVK-18Q9QC07 812 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 SOWAHBA6NEL2 793 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 CD40LGP29965 261 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 KCNAB2Q13303 367 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 PTPRCAPQ14761 206 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 SKIV2LQ15477 1246 aaKnown RBP11.65□□□□□ -0.54
CPSF3-202ENST00000460593 NKG7Q16617 165 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 ARL13BQ3SXY8 428 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 COLEC12Q5KU26 742 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 AGAP9Q5VTM2 703 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 DENND5AQ6IQ26 1287 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 ENPP6Q6UWR7 440 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 GADL1Q6ZQY3 521 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 AKAP14Q86UN6 197 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 MUL1Q969V5 352 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 PABPC5Q96DU9 382 aaKnown RBP11.65□□□□□ -0.54
CPSF3-202ENST00000460593 MBOAT4Q96T53 435 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 ACOX2Q99424 681 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 HOXD1Q9GZZ0 328 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 SIK2Q9H0K1 926 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 ASB7Q9H672 318 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 FAM118AQ9NWS6 357 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 SNX5Q9Y5X3 404 aa11.65□□□□□ -0.54
CPSF3-202ENST00000460593 IGKV6-21A0A0C4DH24 114 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 NCF1BA6NI72 391 aaPredicted RBP11.65□□□□□ -0.55
CPSF3-202ENST00000460593 NCF1CA8MVU1 366 aaPredicted RBP11.65□□□□□ -0.55
CPSF3-202ENST00000460593 SSX4O60224 188 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 NCF1P14598 390 aaPredicted RBP11.65□□□□□ -0.55
CPSF3-202ENST00000460593 ALDH3A2P51648 485 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 RACK1P63244 317 aaKnown RBP11.65□□□□□ -0.55
CPSF3-202ENST00000460593 EMX1Q04741 257 aaPredicted RBP11.65□□□□□ -0.55
CPSF3-202ENST00000460593 UGP2Q16851 508 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.65□□□□□ -0.55
CPSF3-202ENST00000460593 SPESP1Q6UW49 350 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 GALNT5Q7Z7M9 940 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 PHYKPLQ8IUZ5 450 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 POC5Q8NA72 575 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 DACH2Q96NX9 599 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 GPR20Q99678 358 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 FEM1AQ9BSK4 669 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 BDH2Q9BUT1 245 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms