RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ADAMTS3O15072 1205 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 OGTO15294 1046 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 FFAR2O15552 330 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CYTIPO60759 359 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 JRKO75564 520 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CTAG2O75638 210 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CABYRO75952 493 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CALB1P05937 261 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CSF1RP07333 972 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT19P08727 400 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF865P0CJ78 1059 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MTHFD2P13995 350 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GFAPP14136 432 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GNSP15586 552 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 IFNAR1P17181 557 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PHBP35232 272 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 NUDT1P36639 197 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GSTM5P46439 218 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 HSPA7P48741 367 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 NPY2RP49146 381 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PCBP3P57721 371 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TAS2R40P59535 323 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GMFBP60983 142 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 UBE2HP62256 183 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 FOXO4P98177 505 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 FCHO2Q0JRZ9 810 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RPA4Q13156 261 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RRP1BQ14684 758 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 FASTKD3Q14CZ7 662 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MPEG1Q2M385 716 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 DNAL1Q4LDG9 190 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM98BQ52LJ0 330 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ARHGEF16Q5VV41 709 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PLEKHA7Q6IQ23 1121 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PGBD2Q6P3X8 592 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC36A4Q6YBV0 504 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 Q6ZUG5 572 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 KCTD1Q719H9 257 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CACNA2D4Q7Z3S7 1137 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CCDC28AQ8IWP9 274 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SHISA5Q8N114 240 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MFSD4AQ8N468 514 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 OR6B3Q8NGW1 331 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 OR14C36Q8NHC7 312 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SPATA20Q8TB22 786 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MCOLN3Q8TDD5 553 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 DTD1Q8TEA8 209 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 AGAP11Q8TF27 550 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MRPS27Q92552 414 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 NSMCE2Q96MF7 247 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 BPIFA3Q9BQP9 254 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PARD6GQ9BYG4 376 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MRPL18Q9H0U6 180 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC6A17Q9H1V8 727 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TASP1Q9H6P5 420 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ADARB2Q9NS39 739 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 AGPAT5Q9NUQ2 364 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ETNK2Q9NVF9 386 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 INTS13Q9NVM9 706 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RNF186Q9NXI6 227 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 USP36Q9P275 1121 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 C5AR2Q9P296 337 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 USP18Q9UMW8 372 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RNF24Q9Y225 148 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PVALEFA0A1B0GWK0 134 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 A0A1W2PN81 502 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 OR6C75A6NL08 312 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 F8W735 103 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 hCG_2039718K7EN88 272 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GRM8O00222 908 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 EXOC3O60645 756 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RASAL1O95294 804 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SNAP29O95721 258 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 POMCP01189 267 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PROCP04070 461 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GJB1P08034 283 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PLEKP08567 350 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GAAP10253 952 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 HNRNPLP14866 589 aaKnown RBP eCLIP4.8□□□□□ -1.642e-7■■■■□ 24.6
CCDC88A-209ENST00000456975 PON1P27169 355 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RPL10P27635 214 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TYK2P29597 1187 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PKLRP30613 574 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MAT2AP31153 395 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 AKT1P31749 480 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 GTF2H1P32780 548 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CHRNA7P36544 502 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PTGER3P43115 390 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 HCAR3P49019 387 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC26A2P50443 739 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SERPINB9P50453 376 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CCT4P50991 539 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CLCNKAP51800 687 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 LUMP51884 338 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CTSWP56202 376 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF33AQ06730 810 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 IL24Q13007 206 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MALLQ13021 153 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MORF4L2Q15014 288 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TSC22D1Q15714 1073 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms