RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CDKN1CP49918 316 aaPredicted RBP14.98□□□□□ -0.01
LDLR-202ENST00000455727 CCL23P55773 120 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 RAB33AQ14088 237 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 TSNQ15631 228 aaKnown RBP14.98□□□□□ -0.01
LDLR-202ENST00000455727 GRAMD1BQ3KR37 738 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.98□□□□□ -0.019e-8■■■■□ 21.8
LDLR-202ENST00000455727 TICAM1Q8IUC6 712 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 PCYOX1LQ8NBM8 494 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 PIP4K2CQ8TBX8 421 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 TRPC4APQ8TEL6 797 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 KCNJ9Q92806 393 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 ZFRQ96KR1 1074 aaKnown RBP14.98□□□□□ -0.01
LDLR-202ENST00000455727 NSUN5Q96P11 429 aaKnown RBP14.98□□□□□ -0.01
LDLR-202ENST00000455727 FEM1AQ9BSK4 669 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 FBRSL1Q9HCM7 1045 aaKnown RBP14.98□□□□□ -0.01
LDLR-202ENST00000455727 IKZF3Q9UKT9 509 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 OR51B4Q9Y5P0 310 aa14.98□□□□□ -0.01
LDLR-202ENST00000455727 H0Y626 953 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 GFRA2O00451 464 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 SNAP91O60641 907 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 UPP2O95045 317 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 MATN4O95460 622 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 TSPAN12O95859 305 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 ESR1P03372 595 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 C8BP07358 591 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 UBTFL6P0CB48 400 aaPredicted RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 PTGER3P43115 390 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 FOXA1P55317 472 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 GEN1Q17RS7 908 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 CTSL3PQ5NE16 218 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 SAMD4BQ5PRF9 694 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 ANKRD33Q7Z3H0 272 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 STK40Q8N2I9 435 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 HJURPQ8NCD3 748 aaPredicted RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 KLHL32Q96NJ5 620 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 SMIM14Q96QK8 99 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 C19orf43Q9BQ61 176 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 GPBP1L1Q9HC44 474 aaPredicted RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 DNMT3BQ9UBC3 853 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 TRMT6Q9UJA5 497 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 ASB3Q9Y575 518 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 CDC7O00311 574 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 DENRO43583 198 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 TBL1XO60907 577 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 FKTNO75072 461 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 LBPP18428 481 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 HDCP19113 662 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 MRPL19P49406 292 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 IL2P60568 153 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 PABPC1LQ4VXU2 614 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 LINGO4Q6UY18 593 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 EFL1Q7Z2Z2 1120 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 DNAJB7Q7Z6W7 309 aaPredicted RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 TMEM150AQ86TG1 271 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 MIER2Q8N344 545 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 ZNF483Q8TF39 744 aaPredicted RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 DUS3LQ96G46 650 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 NUSAP1Q9BXS6 441 aaKnown RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 TUBB1Q9H4B7 451 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 MAGEE1Q9HCI5 957 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 SDR39U1Q9NRG7 319 aaPredicted RBP14.97□□□□□ -0.01
LDLR-202ENST00000455727 IL17CQ9P0M4 197 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 GALPQ9UBC7 116 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 NDUFAF1Q9Y375 327 aa14.97□□□□□ -0.01
LDLR-202ENST00000455727 COL4A6Q14031 1691 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 OBSL1O75147 1896 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 MLYCDO95822 493 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 MBL2P11226 248 aaPredicted RBP14.96□□□□□ -0.01
LDLR-202ENST00000455727 MZF1P28698 734 aaPredicted RBP14.96□□□□□ -0.01
LDLR-202ENST00000455727 SMAD3P84022 425 aaKnown RBP14.96□□□□□ -0.01
LDLR-202ENST00000455727 RHDQ02161 417 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 GRIK2Q13002 908 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 IKBKEQ14164 716 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 ZRANB3Q5FWF4 1079 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 OGFOD2Q6N063 350 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 UGT3A1Q6NUS8 523 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 SPATA24Q86W54 205 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 CARNMT1Q8N4J0 409 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 EFHBQ8N7U6 833 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 OR9I1Q8NGQ6 314 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 CD200R1Q8TD46 325 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 TSPEARQ8WU66 669 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 DCUN1D1Q96GG9 259 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 TUBGCP5Q96RT8 1024 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 HOPXQ9BPY8 73 aaPredicted RBP14.96□□□□□ -0.01
LDLR-202ENST00000455727 HERC2P3Q9BVR0 1158 aa14.96□□□□□ -0.01
LDLR-202ENST00000455727 A0A0J9YYE9 177 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 TYW5A2RUC4 315 aaKnown RBP14.95□□□□□ -0.02
LDLR-202ENST00000455727 PRORSD1PA6NEY8 169 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 BTN3A1O00481 513 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 GREM1O60565 184 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 NIPSNAP2O75323 286 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 MT-CO1P00395 513 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 TCN1P20061 433 aaPredicted RBP14.95□□□□□ -0.02
LDLR-202ENST00000455727 HMGCLP35914 325 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 AP1S1P61966 158 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 FOLH1Q04609 750 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 GRM2Q14416 872 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 KIF19Q2TAC6 998 aa14.95□□□□□ -0.02
LDLR-202ENST00000455727 COQ5Q5HYK3 327 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms