RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CLDN7O95471 211 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 MX2P20592 715 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 GARSP41250 739 aaKnown RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 STC1P52823 247 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 EPHA4P54764 986 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 TYRO3Q06418 890 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 ABHD18Q0P651 414 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 NFATC2Q13469 925 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 KIR2DS5Q14953 304 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 PTPRRQ15256 657 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 NFKBIBQ15653 356 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 TDRD12Q587J7 1177 aaKnown RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 RFLNAQ6ZTI6 216 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 ARHGAP22Q7Z5H3 698 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 TRIM74Q86UV6 250 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 PTRH1Q86Y79 214 aaKnown RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 PHYKPLQ8IUZ5 450 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 NIPA2Q8N8Q9 360 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 CCNYQ8ND76 341 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 APOBEC4Q8WW27 367 aaKnown RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 FATE1Q969F0 183 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 COX14Q96I36 57 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 MLPHQ9BV36 600 aaPredicted RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 PKD2L2Q9NZM6 624 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 TMEM9Q9P0T7 183 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 ANAPC7Q9UJX3 599 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 PCDHB3Q9Y5E6 796 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 NKX2-8O15522 239 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 SOD1P00441 154 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 ATP1A1P05023 1023 aaKnown RBP13.17□□□□□ -0.3
HMGB3-204ENST00000448905 ANP32AP39687 249 aaKnown RBP13.17□□□□□ -0.3
HMGB3-204ENST00000448905 MAPK9P45984 424 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 ARSDP51689 593 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 GALNT2Q10471 571 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 PDK2Q15119 407 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 C9orf43Q8TAL5 461 aaPredicted RBP13.17□□□□□ -0.3
HMGB3-204ENST00000448905 SYN2Q92777 582 aaPredicted RBP13.17□□□□□ -0.3
HMGB3-204ENST00000448905 RTP4Q96DX8 246 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 TSGA13Q96PP4 275 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 AGAP2Q99490 1192 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 CTRCQ99895 268 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 PCDH9Q9HC56 1237 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 RAD18Q9NS91 495 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 TBC1D29Q9UFV1 150 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 PRKAB1Q9Y478 270 aa13.17□□□□□ -0.3
HMGB3-204ENST00000448905 A0A0U1RQS6 177 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 C1orf232A0A0U1RR37 186 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ANKRD66B4E2M5 251 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 GRID2O43424 1007 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 DNAJC6O75061 913 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 STK17BO94768 372 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 F3P13726 295 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 TCF4P15884 667 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 TCN2P20062 427 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 IL4RP24394 825 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 CSF2RBP32927 897 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 SPINT3P49223 89 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 TPM4P67936 248 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 DSC2Q02487 901 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 PAFAH1B3Q15102 231 aaKnown RBP13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ANO6Q4KMQ2 910 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 FIGNQ5HY92 759 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 COLEC12Q5KU26 742 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ZFYVE27Q5T4F4 411 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ALG1LQ6GMV1 187 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ZNF761Q86XN6 746 aaPredicted RBP13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ESX1Q8N693 406 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 BMPERQ8N8U9 685 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 LPCAT1Q8NF37 534 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 MAML1Q92585 1016 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 PMEPA1Q969W9 287 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 ZNF830Q96NB3 372 aaPredicted RBP13.16□□□□□ -0.3
HMGB3-204ENST00000448905 LYSMD1Q96S90 227 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 NUP85Q9BW27 656 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 TDRD1Q9BXT4 1180 aaKnown RBP13.16□□□□□ -0.3
HMGB3-204ENST00000448905 SPRY4Q9C004 299 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 THAP2Q9H0W7 228 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 CARD9Q9H257 536 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 CPNE7Q9UBL6 633 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 LCMT1Q9UIC8 334 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 KCNK6Q9Y257 313 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 MYO18BQ8IUG5 2567 aa13.16□□□□□ -0.3
HMGB3-204ENST00000448905 LRRK1Q38SD2 2015 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 GPR89AB7ZAQ6 455 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 TOX3O15405 576 aaPredicted RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 SLC25A14O95258 325 aaPredicted RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 SERPING1P05155 500 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 CYP1A2P05177 515 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 KRT7P08729 469 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 GPR89BP0CG08 455 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 PRKAR1AP10644 381 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 ACP5P13686 325 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 AMD1P17707 334 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 CASRP41180 1078 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 SLC25A11Q02978 314 aaKnown RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 FOXM1Q08050 763 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 MMRN1Q13201 1228 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 NR1I3Q14994 352 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms