RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RAD1O60671 282 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 PPFIA2O75334 1257 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 WISP1O95388 367 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 LIFP15018 202 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 IL4RP24394 825 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 UGT1A3P35503 534 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 CD86P42081 329 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 TAS2R40P59535 323 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 ZBED6P86452 979 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 GALNT3Q14435 633 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 PLA2G4EQ3MJ16 856 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 DCAF12Q5T6F0 453 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 ANKS6Q68DC2 871 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 TMEM71Q6P5X7 295 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 CCDC13Q8IYE1 715 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 CCHCR1Q8TD31 782 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 NCSTNQ92542 709 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 NKD1Q969G9 470 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 SCARF2Q96GP6 870 aaPredicted RBP14.39□□□□□ -0.11
SDC1-204ENST00000429035 COX14Q96I36 57 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 CTRCQ99895 268 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 ARFGAP3Q9NP61 516 aa14.39□□□□□ -0.11
SDC1-204ENST00000429035 MYO18BQ8IUG5 2567 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 FADS2P1A8MWK0 482 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.38□□□□□ -0.11
SDC1-204ENST00000429035 GOLGA6L19H0YKK7 550 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 KCNK1O00180 336 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 DNAJC6O75061 913 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 PROSCO94903 275 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 MX2P20592 715 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 CCNCP24863 283 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 FASLGP48023 281 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 ARSDP51689 593 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 ARSEP51690 589 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 RAB15P59190 212 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 IHHQ14623 411 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 CLCA4Q14CN2 919 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 QPCTQ16769 361 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 ZNF569Q5MCW4 686 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 FAM182AQ5T1J6 154 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 ALG1LQ6GMV1 187 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 CRTC3Q6UUV7 619 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 ATG14Q6ZNE5 492 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 MAP7D3Q8IWC1 876 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 SFRP1Q8N474 314 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.38□□□□□ -0.11
SDC1-204ENST00000429035 CTNNBL1Q8WYA6 563 aaPredicted RBP14.38□□□□□ -0.11
SDC1-204ENST00000429035 SYN2Q92777 582 aaPredicted RBP14.38□□□□□ -0.11
SDC1-204ENST00000429035 RNF31Q96EP0 1072 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 FUCA2Q9BTY2 467 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 MLPHQ9BV36 600 aaPredicted RBP14.38□□□□□ -0.11
SDC1-204ENST00000429035 DDA1Q9BW61 102 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 CEP41Q9BYV8 373 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 B3GNT4Q9C0J1 378 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 VPS18Q9P253 973 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 TBC1D29Q9UFV1 150 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 LUC7L2Q9Y383 392 aaKnown RBP14.38□□□□□ -0.11
SDC1-204ENST00000429035 PCDHGA3Q9Y5H0 932 aa14.38□□□□□ -0.11
SDC1-204ENST00000429035 ASH1LQ9NR48 2969 aaKnown RBP14.37□□□□□ -0.11
SDC1-204ENST00000429035 TENM4Q6N022 2769 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 LRRD1A4D1F6 860 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PRLP01236 227 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 JCHAINP01591 159 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 GYPCP04921 128 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 KRT7P08729 469 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PIRTP0C851 137 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PRKAR1AP10644 381 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 SFTPCP11686 197 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 SLC2A4P14672 509 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 CES1P23141 567 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PBX1P40424 430 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 SPINT3P49223 89 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PDK2Q15119 407 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PCSK7Q16549 785 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 ZNF648Q5T619 568 aaPredicted RBP14.37□□□□□ -0.11
SDC1-204ENST00000429035 HENMT1Q5T8I9 393 aaKnown RBP14.37□□□□□ -0.11
SDC1-204ENST00000429035 BORAQ6PGQ7 559 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 XKR5Q6UX68 686 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 LYSMD3Q7Z3D4 306 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 KDELC2Q7Z4H8 507 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 SLC9B2Q86UD5 537 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PHYKPLQ8IUZ5 450 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 ARRDC2Q8TBH0 407 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 FAM71BQ8TC56 605 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 HDAC11Q96DB2 347 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 HERPUD2Q9BSE4 406 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 SPATA16Q9BXB7 569 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 PACSIN1Q9BY11 444 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 ASPSCR1Q9BZE9 553 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 DEF6Q9H4E7 631 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 FAM83DQ9H4H8 585 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 STARD5Q9NSY2 213 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 AMACRQ9UHK6 382 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 CAPN11Q9UMQ6 739 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 HEY1Q9Y5J3 304 aa14.37□□□□□ -0.11
SDC1-204ENST00000429035 B4E171 279 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 GRID2O43424 1007 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 MTA2O94776 668 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 MAN1A1P33908 653 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 TSPAN7P41732 249 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 135.5 ms