RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NFKBIL1Q9UBC1 381 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CRYL1Q9Y2S2 319 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 MTO1Q9Y2Z2 717 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 LRRK1Q38SD2 2015 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 FOXO6A8MYZ6 492 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 COPEO14579 308 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 MMP20O60882 483 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 S1PR4O95977 384 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 PRSS56P0CW18 603 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 PYGBP11216 843 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 ZNF7P17097 686 aaPredicted RBP17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 PTGER3P43115 390 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 POU4F1Q01851 419 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 SETMARQ53H47 684 aaPredicted RBP17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM45BPQ6NSW5 357 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 CNSTQ6PJW8 725 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 Q6ZVL8 140 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 MICALCLQ6ZW33 695 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 SERPINA9Q86WD7 417 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 OR14C36Q8NHC7 312 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 GDAP1Q8TB36 358 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM45AQ8TCE6 357 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 HMGB4Q8WW32 186 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 AP2M1Q96CW1 435 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 DTD2Q96FN9 168 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 FOXQ1Q9C009 403 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 SLC6A17Q9H1V8 727 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 EPHX3Q9H6B9 360 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 TBC1D17Q9HA65 648 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 SNX15Q9NRS6 342 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 TLK1Q9UKI8 766 aa17.03■□□□□ 0.32
CCDC28B-202ENST00000421922 CHURC1-FNTBB4DL54 471 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 SPINT1O43278 529 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 SPAG7O75391 227 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 MPOP05164 745 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 STMN1P16949 149 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 GABRB3P28472 473 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 TMEM92Q6UXU6 159 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 USP30Q70CQ3 517 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 CYP2U1Q7Z449 544 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 SLC41A1Q8IVJ1 513 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 PIANPQ8IYJ0 282 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 RBFAQ8N0V3 343 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 GJD3Q8N144 294 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 TRAM1L1Q8N609 369 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 APOPT1Q96IL0 206 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 SERAC1Q96JX3 654 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 LRFN3Q9BTN0 628 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 RIOK2Q9BVS4 552 aaKnown RBP17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 CLPBQ9H078 707 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 VPS11Q9H270 941 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 SSU72Q9NP77 194 aaKnown RBP17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 MUTYHQ9UIF7 546 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 FZD4Q9ULV1 537 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 COQ6Q9Y2Z9 468 aa17.02■□□□□ 0.31
CCDC28B-202ENST00000421922 TMEM120BA0PK00 339 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 PRR23AA6NEV1 266 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 CFAP99D6REC4 459 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 TM7SF2O76062 418 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 RECQL5O94762 991 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 RALBP11234 206 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 UGT1A6P19224 532 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 NDUFV2P19404 249 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 UGT1A1P22309 533 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 UGT1A4P22310 534 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 ACRV1P26436 265 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 CRABP2P29373 138 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 FMO4P31512 558 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 AKT1P31749 480 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 UGT1A3P35503 534 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 UGT1A5P35504 534 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 CDKN1CP49918 316 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 ATP1A2P50993 1020 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 DBN1Q16643 649 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 ZNF789Q5FWF6 425 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 KIAA1161Q6NSJ0 714 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 KDM7AQ6ZMT4 941 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 RFLNAQ6ZTI6 216 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 ZNF765Q7L2R6 523 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 SYT13Q7L8C5 426 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 TECPR1Q7Z6L1 1165 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 CMC1Q7Z7K0 106 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 NXPE1Q8N323 547 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 ANKRD42Q8N9B4 389 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 TSTD1Q8NFU3 115 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 LPGAT1Q92604 370 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 DCUN1D1Q96GG9 259 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 MRGPRX1Q96LB2 322 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 COQ10AQ96MF6 247 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 NDNQ99608 321 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 ABCG8Q9H221 673 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 CAB39LQ9H9S4 337 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 SERGEFQ9UGK8 458 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 GNPTGQ9UJJ9 305 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 PCDHB1Q9Y5F3 818 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 COMMD10Q9Y6G5 202 aa17.01■□□□□ 0.31
CCDC28B-202ENST00000421922 TRPM6Q9BX84 2022 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 HMX2A2RU54 273 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 FAM47DPA6NHR8 397 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 E5RI56 91 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms