RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZBTB2Q8N680 514 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 TCEAL4Q96EI5 215 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 ZBTB18Q99592 522 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 NUSAP1Q9BXS6 441 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 BRD9Q9H8M2 597 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 TRPV4Q9HBA0 871 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SLCO1B3Q9NPD5 702 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 NCKAP1Q9Y2A7 1128 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 ZNF839A8K0R7 811 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 FCHO1O14526 889 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SNNO75324 88 aaPredicted RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 TRIM16O95361 564 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 C1QAP02745 245 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 C8GP07360 202 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SLC35E2BP0CK96 405 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 DDX5P17844 614 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 PSMC3P17980 439 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SGSHP51688 502 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 PKNOX1P55347 436 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 MAD2L1Q13257 205 aaPredicted RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 SH2D4BQ5SQS7 431 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 FAM151BQ6UXP7 276 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 SH2D5Q6ZV89 423 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 CLYBLQ8N0X4 340 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 TTC30BQ8N4P2 665 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 NAT16Q8N8M0 369 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 GRIN3AQ8TCU5 1115 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 THOC1Q96FV9 657 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 WWOXQ9NZC7 414 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 IL1RAPL1Q9NZN1 696 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 MUSKO15146 869 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 BUD23O43709 281 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 ANXA5P08758 320 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 HMOX2P30519 316 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 PFKPQ01813 784 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 ELAVL3Q14576 367 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 SNCBQ16143 134 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 CCDC6Q16204 474 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 MMEL1Q495T6 779 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 TRAM1L1Q8N609 369 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 TMEM159Q96B96 161 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 MSANTD3Q96H12 275 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 GATA5Q9BWX5 397 aaPredicted RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 SMG9Q9H0W8 520 aaKnown RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 BPIFA1Q9NP55 256 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 MARCOQ9UEW3 520 aaPredicted RBP8.34□□□□□ -1.07
USP54-203ENST00000418501 GGT7Q9UJ14 662 aa8.34□□□□□ -1.07
USP54-203ENST00000418501 GFRA2O00451 464 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 FZD6O60353 706 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 CYP17A1P05093 508 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PSMA3P25788 255 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 HNF1BP35680 557 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 COPAP53621 1224 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 BNIP1Q12981 228 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SP140Q13342 867 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ART3Q13508 389 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 RUNX3Q13761 415 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 FUT11Q495W5 492 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 TMPRSS6Q8IU80 811 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 NXPE1Q8N323 547 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PIH1D2Q8WWB5 315 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ASZ1Q8WWH4 475 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 VWCEQ96DN2 955 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 LINGO1Q96FE5 620 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 RPL10LQ96L21 214 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 TMEM237Q96Q45 408 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 GPR21Q99679 349 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SCN5AQ14524 2016 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 LTBP2Q14767 1821 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 FOXO6A8MYZ6 492 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SLC16A5O15375 505 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ADH1BP00325 375 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 HLA-FP30511 346 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 IRS1P35568 1242 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ALDH18A1P54886 795 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 NFKB2Q00653 900 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SF3A3Q12874 501 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP54-203ENST00000418501 NFATC2Q13469 925 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SWT1Q5T5J6 900 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 FAM91A1Q658Y4 838 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 DPY19L3Q6ZPD9 716 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PHYKPLQ8IUZ5 450 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 MFSD6LQ8IWD5 586 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PTGR2Q8N8N7 351 aaPredicted RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 KCNV2Q8TDN2 545 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 LPGAT1Q92604 370 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SGF29Q96ES7 293 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ALG14Q96F25 216 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ZNF778Q96MU6 729 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 GAS2L1Q99501 681 aaPredicted RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 MYLK2Q9H1R3 596 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 VCX3BQ9H321 246 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 DHRS7Q9Y394 339 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 COL4A4P53420 1690 aaPredicted RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 ZBTB14O43829 449 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 CATP04040 527 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 FGF3P11487 239 aaPredicted RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 NQO1P15559 274 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 ZNF37AP17032 561 aaPredicted RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 ABCG1P45844 678 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms