RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 RNF8O76064 485 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 PROSCO94903 275 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 CR2P20023 1033 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 OAS2P29728 719 aaKnown RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 VIPR1P32241 457 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 DEKP35659 375 aaKnown RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 ACTR1BP42025 376 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 ACTR1AP61163 376 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 ILF3Q12906 894 aaKnown RBP eCLIP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 DPYSQ14117 519 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 MESDQ14696 234 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 RAET1GQ6H3X3 334 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 TIPARPQ7Z3E1 657 aaKnown RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 CACNA2D3Q8IZS8 1091 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 CBARPQ8N350 705 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 BMPERQ8N8U9 685 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 UBE2Q2Q8WVN8 375 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 SCAMP4Q969E2 229 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 BTBD6Q96KE9 485 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 LZTFL1Q9NQ48 299 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 PHPT1Q9NRX4 125 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 TRMT1Q9NXH9 659 aaKnown RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 SLC39A1Q9NY26 324 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 CWC15Q9P013 229 aaKnown RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 TRIM10Q9UDY6 481 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 PLAAQ9Y263 795 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 SLC17A4Q9Y2C5 497 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 ZKSCAN5Q9Y2L8 839 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 PCDHGA3Q9Y5H0 932 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 MRPS18BQ9Y676 258 aaKnown RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 CPP00450 1065 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 PDHA1P08559 390 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 AMPD1P23109 780 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 CD82P27701 267 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 IL1R2P27930 398 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 MIPP30301 263 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 MAN1A1P33908 653 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 SLC1A1P43005 524 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 ATP1A2P50993 1020 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 AP1S1P61966 158 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 IL10RBQ08334 325 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 LBRQ14739 615 aaKnown RBP12.83□□□□□ -0.36
LINC00339-202ENST00000416769 TMEM164Q5U3C3 297 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 TXNRD3NBQ6F5E7 133 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 XKR5Q6UX68 686 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 NRSN1Q8IZ57 195 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.83□□□□□ -0.36
LINC00339-202ENST00000416769 OR4D9Q8NGE8 314 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 SLC37A2Q8TED4 501 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 PSKH2Q96QS6 385 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 TRNAU1APQ9NX07 287 aaKnown RBP12.83□□□□□ -0.36
LINC00339-202ENST00000416769 KCNK4Q9NYG8 393 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 ALG6Q9Y672 507 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 NOTCH2Q04721 2471 aa12.83□□□□□ -0.36
LINC00339-202ENST00000416769 MACROD2A1Z1Q3 448 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 DAPK3O43293 454 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 MAP3K6O95382 1288 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 PCK1P35558 622 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 FOXK1P85037 733 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 NSUN2Q08J23 767 aaKnown RBP eCLIP12.82□□□□□ -0.36
LINC00339-202ENST00000416769 SMTNL2Q2TAL5 461 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 ERMARDQ5T6L9 678 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 TMCO4Q5TGY1 634 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 C11orf63Q6NUN7 778 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 TECPR1Q7Z6L1 1165 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 SYCE1Q8N0S2 351 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 AGBL5Q8NDL9 886 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 LRRN4Q8WUT4 740 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 RTP4Q96DX8 246 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 OR2M4Q96R27 311 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 SPRY4Q9C004 299 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 ABCG8Q9H221 673 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 SEPT3Q9UH03 358 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 KLHL3Q9UH77 587 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 PILRAQ9UKJ1 303 aa12.82□□□□□ -0.36
LINC00339-202ENST00000416769 UTP20O75691 2785 aaKnown RBP12.82□□□□□ -0.36
LINC00339-202ENST00000416769 NBPF19A0A087WUL8 3843 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 USP27XA6NNY8 438 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 INPP4BO15327 924 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 LRCH4O75427 683 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 PGLSO95336 258 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 ATP1A1P05023 1023 aaKnown RBP12.81□□□□□ -0.36
LINC00339-202ENST00000416769 IVLP07476 585 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 SFTPCP11686 197 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 F8A1P23610 371 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 CSTF2P33240 577 aaKnown RBP eCLIP12.81□□□□□ -0.36
LINC00339-202ENST00000416769 AIF1P55008 147 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 NFATC2Q13469 925 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 BIRC2Q13490 618 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 UBAP2LQ14157 1087 aaKnown RBP12.81□□□□□ -0.36
LINC00339-202ENST00000416769 ZNF235Q14590 738 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 HADHQ16836 314 aaKnown RBP12.81□□□□□ -0.36
LINC00339-202ENST00000416769 DEFB109BQ30KR1 87 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 PYCR3Q53H96 274 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 LRRC66Q68CR7 880 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 DAAM2Q86T65 1068 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 LRRC57Q8N9N7 239 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 PIH1D2Q8WWB5 315 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 NUDCD1Q96RS6 583 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 MGME1Q9BQP7 344 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms