RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 VARSP26640 1264 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 BUD31P41223 144 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CXCR3P49682 368 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CAPZA1P52907 286 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SRP54P61011 504 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SLC25A3Q00325 362 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FNDC3BQ53EP0 1204 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GPAT3Q53EU6 434 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 XKR6Q5GH73 641 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 BAIAP2L2Q6UXY1 529 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GCNT7Q6ZNI0 430 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 USP50Q70EL3 339 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM17Q86X19 198 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 C10orf107Q8IVU9 208 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SPAG16Q8N0X2 631 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 KBTBD7Q8WVZ9 684 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 COMMD4Q9H0A8 199 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 MAGEH1Q9H213 219 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GBA3Q9H227 469 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GBA2Q9HCG7 927 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PHPT1Q9NRX4 125 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CDH22Q9UJ99 828 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 AGO1Q9UL18 857 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 COG5Q9UP83 839 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 RUVBL1Q9Y265 456 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GRIP1Q9Y3R0 1128 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 DIP2BQ9P265 1576 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SMIM35A0A1B0GVV1 85 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PITPNM1O00562 1244 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 DDX3YO15523 660 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TRIM3O75382 744 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 AP2A1O95782 977 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 NUDT14O95848 222 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ADH1CP00326 375 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 HLA-DQA2P01906 255 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ADH1AP07327 375 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FECHP22830 423 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ATP5A1P25705 553 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GPR1P46091 355 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ARCN1P48444 511 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TRIM32Q13049 653 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GK3PQ14409 553 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CYP1B1Q16678 543 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PLEKHG4Q58EX7 1191 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 OLFML1Q6UWY5 402 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FAM183BPQ6ZVS7 135 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 JAZF1Q86VZ6 243 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TRAPPC5Q8IUR0 188 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ERI1Q8IV48 349 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SLC41A1Q8IVJ1 513 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CLHC1Q8NHS4 586 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 LNX1Q8TBB1 728 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FKBP10Q96AY3 582 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 C1orf21Q9H246 121 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TTYH1Q9H313 450 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PRDM12Q9H4Q4 367 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SP140LQ9H930 580 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 IGSF9Q9P2J2 1179 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 NR2E1Q9Y466 385 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CEP170BQ9Y4F5 1589 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 H3BUI4 141 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 AP5Z1O43299 807 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ATG13O75143 517 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CLDN9O95484 217 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 RAP2AP10114 183 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 MMP8P22894 467 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 L1CAMP32004 1257 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CTSKP43235 329 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SLC7A2P52569 658 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 MRPS6P82932 125 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PRR5P85299 388 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 IKBKEQ14164 716 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 DCST1Q5T197 706 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FAM171A1Q5VUB5 890 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GPR107Q5VW38 600 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GLYATQ6IB77 296 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ANKS1BQ7Z6G8 1248 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CELF6Q96J87 481 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 C8orf48Q96LL4 319 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CSPG4P5Q96PW8 444 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 NODALQ96S42 347 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GPATCH1Q9BRR8 931 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CST11Q9H112 138 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SLC25A51Q9H1U9 297 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 BRD9Q9H8M2 597 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FARSBQ9NSD9 589 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GTF2IRD1Q9UHL9 959 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 COLEC10Q9Y6Z7 277 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF487B1APH4 448 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 F8VP50 259 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GTPBP1O00178 669 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CYP7B1O75881 506 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 LGALS2P05162 132 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 USP17L7P0C7H9 530 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CTSEP14091 401 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SP100P23497 879 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PBX3P40426 434 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TAS2R43P59537 309 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CAMK1Q14012 370 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 E2F2Q14209 437 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms